Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0584
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31900.1 68415.m03897 myosin family protein contains Pfam pro...    31   0.80 
At5g47225.1 68418.m05823 hypothetical protein                          29   3.2  
At5g54860.1 68418.m06834 integral membrane transporter family pr...    28   7.5  
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica...    27   9.9  
At1g53820.1 68414.m06126 zinc finger (C3HC4-type RING finger) fa...    27   9.9  

>At2g31900.1 68415.m03897 myosin family protein contains Pfam
           profiles: PF00063 myosin head (motor domain), PF01843
           DIL domain, PF00612 IQ calmodulin-binding motif, PF02736
           myosin N-terminal SH3-like domain
          Length = 1556

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -1

Query: 736 PLEPMKS-SPVTALQVDVWTLLFIGDVKYLSDKSFSNPDSKSSLQALAKFPFKSQPIYPI 560
           PL+P  + S   AL   V++ LF   V  ++     +PD+KS +  L  + F+S  I   
Sbjct: 387 PLDPESAASNRDALAKTVYSRLFDWIVDKINSSIGQDPDAKSLIGVLDIYGFESFKINSF 446

Query: 559 LLDCRNLLMKCMDQNLTYHLY 497
              C NL  + + Q+   H++
Sbjct: 447 EQLCINLTNEKLQQHFNQHVF 467


>At5g47225.1 68418.m05823 hypothetical protein
          Length = 351

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -2

Query: 240 SLIRMRLGHTCSPAHLATIGVLDSSKC-ECGADIGDLNHIILSCP 109
           +L R    H      +  +      KC  CGAD   +NH+I  CP
Sbjct: 47  ALSRPSCDHPLQGPSVTALKAQADKKCPRCGADEETINHLIFECP 91


>At5g54860.1 68418.m06834 integral membrane transporter family
           protein contains 10 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to high affinity
           folic acid/methotrexate transporter 5 (GI:21898554)
           [Leishmania tarentolae]
          Length = 491

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 652 LSDKSFSNPDSKSSLQALAKFPFKSQPIYPILLDC 548
           L D+   +P +   + ++A FP+  +P+Y I+ DC
Sbjct: 41  LKDRLQLSPSASQFVFSVAFFPWSIKPLYGIISDC 75


>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 1047

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 331 ALKQNITEGYNQPFLPNHGSTNIILKPRDFQFDTDEIRPHV 209
           ALK+ +   +N P LP+   TN I      +F  D   P V
Sbjct: 143 ALKRTLPPSFNPPPLPSRSGTNNIRNAGGSRFGADYSHPAV 183


>At1g53820.1 68414.m06126 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 310

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -2

Query: 324 SKILPKGTTNHSFQTMVLQI*F*SHETSSLIRMRLGHTCSPAHLATIGVLDSSKCECG 151
           +++LP+   NH F    + + F SH T  L R  +G      H  + G+  +   E G
Sbjct: 133 ARVLPR--CNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEDTTHGGSEGLPQNQNFESG 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,037,148
Number of Sequences: 28952
Number of extensions: 299899
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)