Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0582
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 31 0.60
At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp... 31 1.0
At3g47700.1 68416.m05196 chromosome structural maintenance prote... 30 1.4
At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to... 29 3.2
At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR... 29 4.2
At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly ident... 29 4.2
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 29 4.2
At1g73660.1 68414.m08530 protein kinase family protein contains ... 28 7.4
At1g27270.1 68414.m03322 paired amphipathic helix repeat-contain... 28 7.4
At1g12380.1 68414.m01431 expressed protein 28 7.4
At1g03080.1 68414.m00282 kinase interacting family protein simil... 28 7.4
At2g43990.1 68415.m05470 expressed protein 27 9.8
At2g40070.1 68415.m04923 expressed protein 27 9.8
At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038... 27 9.8
At1g01430.1 68414.m00058 expressed protein similar to hypothetic... 27 9.8
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 31.5 bits (68), Expect = 0.60
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +2
Query: 8 DTPPNIHIRSCMTLTSN*KTPTYTSTTRNATITSPPSRLGMNPSTNTRTKSSVSSMT*RT 187
DTPP R T +N + T++ T TSP + M + T+ KS S+T T
Sbjct: 707 DTPPVTSTRPDRTSATNLTSDVSGVTSKRQTRTSPAPVMPMILNQTTKMKSDEPSIT-ST 765
Query: 188 HMDSTTSKPASNRCSIFLSDRVHQT 262
D T++ ++ S +S R +T
Sbjct: 766 WPDRTSATDLTSDVSGVISSRQTRT 790
>At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / D111/G-patch
domain-containing protein contains Pfam profiles
PF01585: G-patch domain, PF01805: Surp module
Length = 443
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 181 KNTYGFNNIEASKQSLFDLPVRPGASNTWSSLLVNRVSD-DASCSTQSSQPFTM 339
K Y + +L+D PV PGAS+ + + R SD D+ + + P +M
Sbjct: 223 KPAYQQTGYQIPASALYDTPVEPGASSRSAQASITRPSDSDSFSGPRGADPLSM 276
>At3g47700.1 68416.m05196 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 795
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = -1
Query: 593 IQLLESWSTRKRSHRCLQQSSRMNRLSSERSSQSFRIFSLFLLAKQHDGM--LTESNDLI 420
+Q L S R +S L +R RL++ + F + L L + DG+ LTE+NDLI
Sbjct: 501 LQHLSSIIERSKSVPALYLRARFLRLAASPTIHKF-LDCLLLRCQDADGLTALTENNDLI 559
Query: 419 QILSTSN 399
++ ++ N
Sbjct: 560 KVSNSIN 566
>At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 402
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = +3
Query: 255 IKHLVFAIGEPCIGRCFLLDAIESAIYDVIFKNMAVTTSLITATPDLKIGGGKNLNQVVG 434
+ ++ A G+ + +CFL+D +++ D+I +M V ++ITA G G ++ VG
Sbjct: 284 VDSVIIAYGKGVL-KCFLVDV--NSVCDMIPVDM-VANAMITAAAKHAGGSGVHMVYHVG 339
Query: 435 FSEHSVVLLGE 467
S + V GE
Sbjct: 340 SSHQNPVTFGE 350
>At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 780
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 311 RRNRVSHLRCDLQEHGGYDIADHGHTRPQDWRWKEFESSRW 433
RRN +SHL +LQ H G D G + W E + + W
Sbjct: 28 RRNFLSHLHKELQ-HNGIDAFKDGGIKRSRSIWPELKQAIW 67
>At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly
identical to ania-6a type cyclin [Arabidopsis thaliana]
GI:13924511
Length = 416
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 348 KNMAVTTSLITATPDLKIGGGKNLNQVVGFSEHSVVLLGEKKQTKDSETLRGTLR 512
K+ VTT AT K G N +VG S + +G++++ D E RG R
Sbjct: 297 KDGMVTTPHEKATDSKKSGTESNSQPIVGDSSYERSKVGDRERESDREKERGRER 351
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 82 DDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASKQSLFDLPVRPGASN 261
D KE++ + I ++FD Y S I+ N YG N ++ ++ P P + +
Sbjct: 4061 DPKEQFRVVKCIPNSKQAFDVY-----SAIDQAINLYGQNALKGMVKNKVTRPYSPISES 4115
Query: 262 TWS 270
+W+
Sbjct: 4116 SWA 4118
>At1g73660.1 68414.m08530 protein kinase family protein contains
Pfam profile: PF00069 eukaryotic protein kinase domain
Length = 1030
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +1
Query: 145 YEDQIISIINDLKNTYGFNNIEASKQ--SLFDLPVRPGASN-TWSSLLVNRVSD 297
Y+D+I+ DL YG N ++++ L DL P + TW ++LVNR D
Sbjct: 194 YDDKILDGFYDL---YGVLNASSAERIPPLLDLQGTPVSDGVTWEAVLVNRSGD 244
>At1g27270.1 68414.m03322 paired amphipathic helix repeat-containing
protein contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 241
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 55 KLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASKQSL 228
K K+ +F+D Y + + +KY++ + I+ N +GF + AS Q L
Sbjct: 4 KSKSPEFNFEDGMAYFDAVKVALQDTEPEKYQEFVRIFIDYTANRFGFETLSASLQEL 61
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 68 PTYTSTTRNATITSPPSRLGMNPSTNTRTKSSVSSMT 178
P + S T +TIT P+ +P T+ R ++S ++T
Sbjct: 114 PNFNSVTPISTITPSPTSSSSSPQTHHRKRNSSGAVT 150
>At1g03080.1 68414.m00282 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 49 DLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDL--KNTYGFNNIEASKQ 222
DLK+K D+K + N TIK ++ ++++SI L K GF + SK
Sbjct: 1589 DLKIKVETEEKDEKGKENEYETIKGQINEAEEALEKLLSINRKLVTKVQNGFERSDGSKS 1648
Query: 223 SL 228
S+
Sbjct: 1649 SM 1650
>At2g43990.1 68415.m05470 expressed protein
Length = 632
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 119 RLGMNPSTNTRTKSSVSSMT*RTHMDSTTSKPASNRCSIFL 241
R +NP + T+SS SS +TS ASN C FL
Sbjct: 34 RFPVNPLRDFSTRSSGSSSCSNVSASGSTSGEASNGCHRFL 74
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +2
Query: 44 TLTSN*KTPTYTSTTRNATITSPPSRLGMNPSTNTRTKSSVSSMT*RTHMDSTTSKPAS 220
TLT+N K+ ++ T AT++S PS T ++S+VS+ T T M +TS +S
Sbjct: 195 TLTANSKSSRPSTPTSRATVSS-----ATRPSL-TNSRSTVSATTKPTPMSRSTSLSSS 247
>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
Nuf2 family domain; similar to Myosin-like protein NUF2
(Nuclear filament-containing protein 2) (Nuclear
division protein nuf2) (Swiss-Prot:Q10173)
[Schizosaccharomyces pombe]
Length = 974
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 17 PNIHIRSCMTLTSN*KTPTYTSTTRNATITSPPSRLGMNPSTNTRT 154
P+ HI S L S TTRN T S P+ N +T TR+
Sbjct: 837 PDFHITSSTILASTLHITRLNRTTRNRT-PSGPNHTTPNQNTETRS 881
>At1g01430.1 68414.m00058 expressed protein similar to hypothetical
protein GB:CAB80917 GI:7267605 from [Arabidopsis
thaliana]
Length = 456
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +2
Query: 98 TITSPPSRLGMNPSTNTRTKSSVSSMT*RTHMDSTTSKPASNRCSIFLSDRVHQTLGLRY 277
T+ S P L +PS T + +S+ ++ + S+ S +C IF+ + V G Y
Sbjct: 56 TVRSSPESLPPDPSGLTAITQTSASVDSPANITTIASQNVSTKCDIFIGNWVPDPSGPIY 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,306,827
Number of Sequences: 28952
Number of extensions: 339038
Number of successful extensions: 1057
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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