Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0581
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21H7.06c |||inositol metabolism protein Opi10 |Schizosacchar... 49 5e-07
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.5
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 4.4
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 26 4.4
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.8
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr... 25 7.7
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 25 7.7
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 25 7.7
>SPBC21H7.06c |||inositol metabolism protein Opi10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 49.2 bits (112), Expect = 5e-07
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +1
Query: 97 VFGLIVSGRLVHTDFSPIAETRFLTTITEADSINHVAVFLTGAVPLPPGTAA 252
+FG I +GRLV T+ +A+ +F+ + A+S+NH+ VFL P P G A
Sbjct: 1 MFGAICAGRLVQTNLQQVADNQFVFQLDSAESLNHIVVFLLPNSPFPVGMGA 52
Score = 37.9 bits (84), Expect = 0.001
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +3
Query: 249 SNVYWSWPDPAAPPNWQLLGHISNIKPSAIFKISNLKKLHELTNENKFMGTFGQQQICHN 428
+ VY+ WP +Q LG+++N KPSAIF++ N + L+ +G
Sbjct: 52 AKVYFQWPGKP----FQFLGYLTNEKPSAIFRLKN--TIQTLSENENCVGI--------T 97
Query: 429 AQIGISIEPEAN 464
A +GIS+EP N
Sbjct: 98 AMLGISVEPLTN 109
Score = 28.7 bits (61), Expect = 0.83
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 521 AQKMLENLVNFVASFSVTQ 577
AQK+L NL NF+ASF+ +Q
Sbjct: 135 AQKILTNLYNFLASFATSQ 153
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 27.1 bits (57), Expect = 2.5
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 213 SDRSCTSTTWNSSNVYWSWPDPAAPPNWQLLGHISNIKPSAIF-KISNLKKLHELTNENK 389
S S + T+ +S Y+S P+PA P + ++ N I+ I+NLKK + +
Sbjct: 147 SSYSASETSSVASYSYYSGPNPATPSSSSC--NLVNANSLDIYLNINNLKKSKSVP---R 201
Query: 390 FMGTFGQQQICHNAQIGISIEPEAN 464
G F + + HN + S+E +++
Sbjct: 202 LRGQF-MEPVEHNHPLSKSLEEQSS 225
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 433 K*EYLLSLKPMCNYWLHLLHSKKQTICDICSENVR 537
K +Y+LS+ P + LH+ H + TI DI S R
Sbjct: 58 KKKYILSMFPYPSGLLHIGHVRVYTISDILSRYYR 92
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 375 TNENKFMGTFGQQQICHNAQIGISIEPEA 461
T + KF+ T G Q+ Q+G EP++
Sbjct: 22 TRDGKFLLTVGSNQVIRKFQVGSDEEPDS 50
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +1
Query: 409 SSRYVTMHK*EYL-LSLKPMCNYWLHLLHSKKQTICDI----CSENVRKLSQFCSIILC 570
S++ +H E + ++LK WL+ L K I + S NVRK+ +F ++I+C
Sbjct: 41 STKESVLHFLELIFINLKYQSKKWLYSLVICKSLIALLGRKRLSANVRKIVRFLNVIIC 99
>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = +3
Query: 201 CSSISDRSCTSTTWNSSNVYWSWPDPAAPPNWQLLGHISNIKPSAIFKISNLKKLHELTN 380
C S+ + WNS++ Y+ P W +G S K + L K+H+ N
Sbjct: 84 CQICSNSHPDDSAWNSNDPYYDPKSTPQNPRWYSVGVQSEYKLDRPVTLREL-KMHK-EN 141
Query: 381 ENKFMGTFGQQQI 419
+ K M + ++
Sbjct: 142 QLKSMELLNRSRL 154
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 234 TTWNSSNVYWSWPDPA 281
T W SSN+ W+ P PA
Sbjct: 184 TEWASSNMQWAKPHPA 199
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 475 WLHLLHSKKQTICDICSENVRKLSQF-CSIILC 570
W H L +KK IC C + R S F S LC
Sbjct: 204 WYHNLKNKKYDICPNCYKQGRFSSSFNSSDFLC 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,595
Number of Sequences: 5004
Number of extensions: 56195
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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