Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0581
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10460| Best HMM Match : rve (HMM E-Value=0.00013)                   31   1.1  
SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)                    29   3.5  
SB_15864| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_10460| Best HMM Match : rve (HMM E-Value=0.00013)
          Length = 485

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -1

Query: 278 WVRPAPVDIAAVPGGRGTAPVRNTATWLMLSASVIVVRNLVSAIGEKSVWTSRPDTINPK 99
           +VRP+P   A     R +AP R+ A   +L  S    R  V ++G  S W++   T  P 
Sbjct: 207 FVRPSPGGTAERLPTRQSAPSRSMAITSLLCGSTFKRRTTVLSMGVASDWSTPATTPPPP 266

Query: 98  T 96
           T
Sbjct: 267 T 267


>SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)
          Length = 1033

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 198 PCSSISDRSCTSTTWNSSNVYW---SWPDPAAPPNWQLLGHISNIKPSAIFKISNLK 359
           P  S+S  +CTS    S+N+ W   S PD  APP+  ++   S  +P     ++ +K
Sbjct: 450 PPLSVSVSNCTS---RSTNITWETRSHPDGIAPPSSFIIEQASFFQPGVFSYLTEIK 503


>SB_15864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = +3

Query: 165 PDHNHRSRQHQPCSSISDRSCTSTTWNSSNVYWSWPDP---AAPPNWQLLGHISNIKPSA 335
           P+H +    HQ  + I      +T W +    W+   P   +  P W      SN KP  
Sbjct: 164 PEHPNGHLDHQLENRIIQMDMPNTKWKTETAEWTSRTPEWTSRTPEW--TSRTSNGKP-- 219

Query: 336 IFKISNLKKLHELTNENKFM 395
             +  N++  H+L N N  M
Sbjct: 220 --EHPNVRAEHQLENPNTRM 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,904,546
Number of Sequences: 59808
Number of extensions: 427158
Number of successful extensions: 1090
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)