Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0581
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038613-4|AAB92052.3|  162|Caenorhabditis elegans Hypothetical ...    58   6e-09
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    31   1.0  
U20861-3|AAA62295.1|  283|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z66495-9|CAH19100.1|  670|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z66495-8|CAA91274.1|  680|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF038613-4|AAB92052.3|  162|Caenorhabditis elegans Hypothetical
           protein F42A6.6 protein.
          Length = 162

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 27/52 (51%), Positives = 35/52 (67%)
 Frame = +1

Query: 88  MTNVFGLIVSGRLVHTDFSPIAETRFLTTITEADSINHVAVFLTGAVPLPPG 243
           M+ +FG+IVSGR    +  P+++T F   I  AD+INHV VFLTGA P P G
Sbjct: 1   MSGIFGVIVSGR-TPIEVVPVSDTEFTCEIVNADAINHVVVFLTGAQPFPDG 51



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
 Frame = +3

Query: 252 NVYWSWPDPAAPPNWQLLGHISNIKPSAIFKISNLKKLHELTNENKFMGTFGQQQI--CH 425
           +VY  WP      NW  LG I N KPSAI+K++   +LH+    + F     Q Q+    
Sbjct: 71  SVYIRWPTQDGG-NWHYLGFICNEKPSAIYKVA---QLHKSDASHSFSQFDNQMQLYSSG 126

Query: 426 NAQIGISIEPEANV---QLLASSVALQETNNM 512
           +AQIGI+ E  +++   Q    + A Q+  N+
Sbjct: 127 SAQIGINAESLSDITGRQAADGTQASQQVKNL 158


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
 Frame = +2

Query: 464 CATIGFI-CCTPRNKQYVTFAQKMLENL---VNFVASFSVTQ-DSDDTHT-W--CFIHPA 619
           C T GF  C T  ++QY  FA + + N+     F+  F V    +DDT T W  CF+  A
Sbjct: 370 CNTAGFNKCATLHSQQYAYFAMQQIMNIWACTIFIEPFFVNMIVTDDTFTDWRNCFLAHA 429

Query: 620 G 622
           G
Sbjct: 430 G 430


>U20861-3|AAA62295.1|  283|Caenorhabditis elegans Hypothetical
           protein C28H8.7 protein.
          Length = 283

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
 Frame = +3

Query: 180 RSRQHQPCSSISDRSCTSTTWNSSNVYWSWPDPAAPPNWQL---LGHISN-IKPSAIFKI 347
           R+R++      +D     T  NSSN+YW +   A   N      +GH S  +K     K+
Sbjct: 132 RTRKNMTDELPTDLKTYGTHLNSSNIYWDYGSLANYLNQSESAGIGHFSTYLKTQVNHKV 191

Query: 348 SNLKKLHELTNENKFMGTFGQQ-QICHNAQIGISIE 452
            +L  + E  N  K      +  ++  N QI   IE
Sbjct: 192 IDLISIKEEVNNYKIFHEISRMGKLDENGQIVCQIE 227


>U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical
           protein F47G3.1 protein.
          Length = 886

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 672 ILLEPSLKVLVPRVKGVPAGCMKHQVWVSSESCVTENDATKLTKFSNI 529
           + L P LK + P+   V     K   W   +SC   ND+TKLT +S +
Sbjct: 170 VRLVPDLKYM-PKYDYVEPE-KKIMTWAFVDSCTALNDSTKLTDYSEV 215


>Z66495-9|CAH19100.1|  670|Caenorhabditis elegans Hypothetical
           protein C36A4.9b protein.
          Length = 670

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 IAETRFLTTITEADSINHVAVFLTGAVPLPPGTAAM 255
           ++    + T  + ++  H+   L GA P+ PG AAM
Sbjct: 425 LSNVSIVDTYWQTETGGHMITCLPGATPMKPGAAAM 460


>Z66495-8|CAA91274.1|  680|Caenorhabditis elegans Hypothetical
           protein C36A4.9a protein.
          Length = 680

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 IAETRFLTTITEADSINHVAVFLTGAVPLPPGTAAM 255
           ++    + T  + ++  H+   L GA P+ PG AAM
Sbjct: 435 LSNVSIVDTYWQTETGGHMITCLPGATPMKPGAAAM 470


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,547,694
Number of Sequences: 27780
Number of extensions: 326558
Number of successful extensions: 978
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)