Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0581
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing prote...    29   3.8  
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ...    28   5.0  
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ...    28   5.0  
At5g63470.1 68418.m07968 CCAAT-box binding transcription factor ...    28   6.6  
At2g21810.1 68415.m02592 CHP-rich zinc finger protein, putative        27   8.8  

>At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing protein
           similar to Rieske iron-sulfur protein Tic55 from Pisum
           sativum [gi:2764524]; contains Pfam PF00355 Rieske
           [2Fe-2S] domain
          Length = 539

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
 Frame = +3

Query: 204 SSISDRSCTST--TWNSSNVYWSWPDPAAPPNWQLLGHISNIKPSAIFKISNLKKL---H 368
           + I   +C  T    +S  V W W     PPN + L    N      F IS   +L   H
Sbjct: 171 AKIPKAACVKTYEVKDSQGVVWVWMSTKTPPNPEKLPWFENFARPGFFDISTTHELPYDH 230

Query: 369 ELTNEN 386
            +  EN
Sbjct: 231 SILLEN 236


>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 299 LPVRRCGWVRPAPVDIAAVP 240
           L +RRC +VRP PV   A+P
Sbjct: 164 LNIRRCKYVRPTPVQRHAIP 183


>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 299 LPVRRCGWVRPAPVDIAAVP 240
           L +RRC +VRP PV   A+P
Sbjct: 164 LNIRRCKYVRPTPVQRHAIP 183


>At5g63470.1 68418.m07968 CCAAT-box binding transcription factor
           Hap5a, putative
          Length = 250

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 214 LTGAVPLPP-GTAAMSTGAGLTQPHLL 291
           +T  +P PP G+A++ TG G T  HLL
Sbjct: 24  VTTVIPPPPSGSASIVTGGGATYHHLL 50


>At2g21810.1 68415.m02592 CHP-rich zinc finger protein, putative 
          Length = 128

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 493 SKKQTICDICSENVRKLSQFCSI 561
           S+++  CDIC EN+   + FC I
Sbjct: 68  SQEKMKCDICRENIYDFNLFCRI 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,760
Number of Sequences: 28952
Number of extensions: 293350
Number of successful extensions: 891
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)