Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0580
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    26   3.1  
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    26   3.1  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = -1

Query: 514 TFRRELLPKRNHLYP-----KLAKTKHYVPFPLLFVEAINDLTKK 395
           TF R+LLP+ NH  P     +L + K+      LF + I++L KK
Sbjct: 212 TFARDLLPETNHYSPSHAFIRLLEKKN--KLSTLFTQNIDNLEKK 254


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 538 IQPRIQDLTFRRELLPKRNHLYPKLAKTKHYVPFP 434
           I+ R +D   RRE+L + + L P   K  H  P P
Sbjct: 119 IETRKKDRKNRREMLKRTSALQPAAPKPTHKKPVP 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,615
Number of Sequences: 5004
Number of extensions: 44701
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)