Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0580
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0208 - 26782955-26783275,26784317-26784632,26784732-26784835     40   0.001
01_07_0126 - 41222916-41222942,41223120-41223190,41223478-412235...    31   0.58 
09_04_0644 + 19181335-19184424                                         27   7.2  
08_01_0022 - 163512-163817,165963-166032,166074-166151,166399-16...    27   7.2  
06_03_1219 - 28491185-28494415                                         27   7.2  
06_03_1217 - 28484007-28487237                                         27   7.2  
06_03_1221 - 28514952-28518152                                         27   9.5  
06_03_1220 - 28505306-28508497                                         27   9.5  
03_03_0249 + 15832086-15833261                                         27   9.5  
02_01_0314 + 2106976-2107658,2107792-2107931,2108367-2108636,210...    27   9.5  

>02_05_0208 - 26782955-26783275,26784317-26784632,26784732-26784835
          Length = 246

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +1

Query: 25  EVKRKRFEKVLELMQKMQDLGQPPTELVGDIGP 123
           E + +   K+ E+MQ MQ+ GQPP++LV DI P
Sbjct: 204 EKEPENMAKIFEIMQNMQECGQPPSDLVQDIAP 236


>01_07_0126 -
           41222916-41222942,41223120-41223190,41223478-41223560,
           41223587-41223653,41223740-41223848,41224431-41224511,
           41224671-41224940,41225035-41226510,41226832-41226908,
           41227812-41227912,41229397-41229660,41230964-41231136
          Length = 932

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 85  GQPPTELVGDIGPVPQSFGPAAQDPS 162
           G+PP        PVP SFGP  + PS
Sbjct: 17  GEPPAAAAASPAPVPSSFGPRPRPPS 42


>09_04_0644 + 19181335-19184424
          Length = 1029

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 537 YSPVYKI*HFA--GNFYQKEITYIQNWQKRNTMYHFLFC 427
           Y   Y I H    GN Y KEI+ I+  Q  + ++ ++FC
Sbjct: 608 YMAYYTIAHLLQNGNMYGKEISSIRPEQMTDEVWDYVFC 646


>08_01_0022 -
           163512-163817,165963-166032,166074-166151,166399-166439,
           166830-166880,166997-167065,167924-168019,169217-169328,
           169629-169774,169965-170015,170171-170281,170378-170447,
           172496-172935
          Length = 546

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 10  DSDSEEVKRKRFEKVLELMQKMQDLGQPPTELVGDIGPVPQSF 138
           + D EE+KRK  E++LEL ++   L    +  V  +  +P+ +
Sbjct: 27  EKDPEEMKRKLKERILELEKEEVPLPDDASAFVHHLSRLPKRY 69


>06_03_1219 - 28491185-28494415
          Length = 1076

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 535  QPRIQDLTFRRELLPKRNHLYPKLAKTKHYVP 440
            + R+ D    R +LP R H+  +L  T  Y+P
Sbjct: 931  EARVADFGLARLILPDRTHVTTELVGTPGYIP 962


>06_03_1217 - 28484007-28487237
          Length = 1076

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 535  QPRIQDLTFRRELLPKRNHLYPKLAKTKHYVP 440
            + R+ D    R +LP R H+  +L  T  Y+P
Sbjct: 934  EARVADFGLARLILPDRTHVTTELVGTPGYIP 965


>06_03_1221 - 28514952-28518152
          Length = 1066

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 535  QPRIQDLTFRRELLPKRNHLYPKLAKTKHYVP 440
            + R+ D    R +LP R H+  +L  T  Y+P
Sbjct: 927  EARVADFGLARLILPDRTHVTTELVGTLGYIP 958


>06_03_1220 - 28505306-28508497
          Length = 1063

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 535  QPRIQDLTFRRELLPKRNHLYPKLAKTKHYVP 440
            + R+ D    R +LP R H+  +L  T  Y+P
Sbjct: 924  EARVADFGLARLILPDRTHVTTELVGTLGYIP 955


>03_03_0249 + 15832086-15833261
          Length = 391

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 151 VPLDRSSEVPVLYPRPAQWEAGL-GLASSASTPTLSRS 41
           V +DR   +P   PRP    AGL  L++ AS PT  R+
Sbjct: 2   VDVDRRPPLPHGLPRPPSHAAGLRRLSTRASAPTTPRA 39


>02_01_0314 +
           2106976-2107658,2107792-2107931,2108367-2108636,
           2109938-2110254
          Length = 469

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 124 PVLYPRPAQWEAGLGLASSASTPTLSR 44
           PV+ P PA W+ GL L   A      R
Sbjct: 417 PVMMPSPAIWQGGLSLDQQAQFQAFDR 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,332,626
Number of Sequences: 37544
Number of extensions: 294645
Number of successful extensions: 727
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)