Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0580
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical pr...    38   0.006
L23645-8|AAK26133.1|  282|Caenorhabditis elegans Peroxisome asse...    30   1.2  
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge...    27   6.5  

>Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical
           protein F54D1.6 protein.
          Length = 1423

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
 Frame = -2

Query: 501 NFYQKEITYIQNWQKRNTMYHFLFCLLKL--LMT*QKKN 391
           N YQ E  Y+ +W+++N +YH+ F  LKL  L T Q++N
Sbjct: 557 NLYQVEQWYMNDWERQNDLYHYRFGYLKLAPLKTNQEQN 595


>L23645-8|AAK26133.1|  282|Caenorhabditis elegans Peroxisome
           assembly factor protein19 protein.
          Length = 282

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 16  DSEEVKRKRFEKVLELMQKMQDLGQPPTELVG 111
           +++    + FEK+ +L+ ++Q  G PP ELVG
Sbjct: 222 EADPASIEHFEKLGKLLVELQQYGYPPKELVG 253


>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 2 protein.
          Length = 1032

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 107 SGI*DRYLRASVQRHRIHHNVASTRRLTTRG 199
           S I + Y ++ V   R+H  +  TRRL T+G
Sbjct: 354 SNIDEMYRKSQVNEARVHDAINFTRRLLTKG 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,369,353
Number of Sequences: 27780
Number of extensions: 255891
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)