Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0580
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 25  EVKRKRFEKVLELMQKMQDLGQPPTELVGDIG 120
           ++++ RF+K+ E M+  ++   PP  + GD G
Sbjct: 312 QMRKNRFQKIAESMKTARENPGPP-GVPGDHG 342


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 25  EVKRKRFEKVLELMQKMQDLGQPPTELVGDIG 120
           ++++ RF+K+ E M+  ++   PP  + GD G
Sbjct: 312 QMRKNRFQKIAESMKTARENPGPP-GVPGDHG 342


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 25  EVKRKRFEKVLELMQKMQDLGQPPTELVGDIG 120
           ++++ RF+K+ E M+  ++   PP  + GD G
Sbjct: 251 QMRKNRFQKIAESMKTARENPGPP-GVPGDHG 281


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 513 HFAGNFYQKEITY 475
           HFAGNF    IT+
Sbjct: 213 HFAGNFSSISITF 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,827
Number of Sequences: 438
Number of extensions: 2665
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)