Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0580
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03490.1 68416.m00347 peroxisomal protein PEX19 family protei...    39   0.002
At5g17550.1 68418.m02059 peroxisomal protein PEX19 family protei...    38   0.004
At3g60300.1 68416.m06740 RWD domain-containing protein contains ...    32   0.28 
At5g66670.1 68418.m08404 hypothetical protein contains Pfam:PF05...    29   1.5  
At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containi...    29   2.6  
At2g18630.1 68415.m02169 expressed protein unusual splice site a...    29   2.6  
At3g28320.1 68416.m03538 hypothetical protein similar to At14a (...    27   6.0  

>At3g03490.1 68416.m00347 peroxisomal protein PEX19 family protein
           contains Pfam profile: PF04614 Pex19 protein family
          Length = 248

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 14/25 (56%), Positives = 22/25 (88%)
 Frame = +1

Query: 49  KVLELMQKMQDLGQPPTELVGDIGP 123
           K++E+MQKMQ+ GQPP+++V +I P
Sbjct: 200 KIMEIMQKMQECGQPPSDIVKEIDP 224


>At5g17550.1 68418.m02059 peroxisomal protein PEX19 family protein
           contains Pfam profile: PF04614 Pex19 protein family
          Length = 245

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 13/25 (52%), Positives = 22/25 (88%)
 Frame = +1

Query: 49  KVLELMQKMQDLGQPPTELVGDIGP 123
           K++E+MQKMQ+ GQPP+++V ++ P
Sbjct: 197 KIMEIMQKMQECGQPPSDIVQEMDP 221


>At3g60300.1 68416.m06740 RWD domain-containing protein contains
           weak similarity to RING finger protein 25 (RING finger
           protein AO7) (Swiss-Prot:Q9QZR0) [Mus musculus]
          Length = 366

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 7   LDSDSEEVKRKRFEKVLELMQKMQDLGQP 93
           L SDSE ++R+RFE +L+  ++   L QP
Sbjct: 239 LQSDSENIRRERFESILKTQEEKGGLVQP 267


>At5g66670.1 68418.m08404 hypothetical protein contains
           Pfam:PF05055: Protein of unknown function (DUF677)
          Length = 408

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 7   LDSDSEEVKRKRFEKVLELMQKMQDLGQP 93
           +D+D  E K+K++ K LE M K + +G P
Sbjct: 165 VDTDLGESKKKKYVKTLEEMNKFKAMGDP 193


>At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 701

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 1   NELDSDSEEVKRKRFEKVLELMQKMQDLGQPPTE 102
           +  DS +E VKR+ ++KV ELM+++ + G    E
Sbjct: 581 DRFDSYNETVKRQIYQKVDELMEEISEYGYSEEE 614


>At2g18630.1 68415.m02169 expressed protein unusual splice site at
           second intron; GA instead of conserved GT at donor site;
           similar to At14a GI:11994571 and GI:11994573
           [Arabidopsis thaliana]
          Length = 393

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 9/34 (26%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   NELDSDSEEVKRKRFEKVLELMQKMQDLGQPPTE 102
           N+ + ++E+ + +++EK LE +++ +  G+P T+
Sbjct: 150 NQFEEENEDKENRKYEKTLEELKRFKVAGEPFTK 183


>At3g28320.1 68416.m03538 hypothetical protein similar to At14a
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 280

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +1

Query: 4   ELDSDSEE----VKRKRFEKVLELMQKMQDLGQP 93
           +   DSEE    VK+KR+ K LE + K + +G P
Sbjct: 30  QFKKDSEEKDVGVKKKRYGKTLEELMKFKAMGNP 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,664,122
Number of Sequences: 28952
Number of extensions: 235960
Number of successful extensions: 679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)