Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0576
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 37 0.002
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 28 1.0
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 27 2.4
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 26 4.2
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 26 5.5
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 5.5
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.5
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 25 7.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.3
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi... 25 9.6
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 9.6
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = -3
Query: 609 IGTFTIKIPKVT-EPSEFHKSMYSFDLKLWN 520
+GT I+ P +T +PSEF KS+Y ++ +LWN
Sbjct: 43 VGTILIRSPILTRQPSEFEKSIYKYNAELWN 73
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -3
Query: 429 FESLDRASCVADYLHHFVLY 370
FESLD A+ VA+ +H+++LY
Sbjct: 153 FESLDVANVVAETMHNYLLY 172
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 327 EKKNNNSPKKRDQTHIEQNGEDSQQRKR 410
E+ N+NSP+ TH NGE+ Q R++
Sbjct: 261 ERNNSNSPRNFS-THGNGNGENGQPRRK 287
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = -2
Query: 352 FGELLFFFSHCWCRYLNSMFVFCVTIICS 266
FG + +H WC YL + +I S
Sbjct: 545 FGSYFMYINHGWCSYLGGLIFTSYVLIYS 573
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 148 NSITDIVKNVQYTCRYTSVPNDNNVNL 68
+S+TD V V Y Y +VPN + NL
Sbjct: 23 SSVTDNVHRVNYCYNYHTVPNLSQRNL 49
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 285 QKTNILLRYLHQQWEKKNNNSPKK 356
Q T++L+ + +++EKKN P+K
Sbjct: 256 QLTDVLVNFFAKEFEKKNGIDPRK 279
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 276 IVTQKTNILLRYLHQQWEKKNNNSPKKRDQTHIEQ 380
++ ++T+++L+ L ++ E + KKR Q H E+
Sbjct: 13 VMNKQTSLVLQNLKEETENQLKELEKKRSQLHKEE 47
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 227 KGHLYIYPLRHTF*TNYCNTKNKHTIKIPTPAMG 328
+GH+ + H T N KN T IP P G
Sbjct: 207 RGHVVLVKAPHVTETRILNGKNSDTYIIPRPLNG 240
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 24 HLVSYIHKSYVLFHYRLTLL 83
HL+ Y+ K+Y L HY + LL
Sbjct: 2483 HLLVYLSKTYGLHHYCILLL 2502
>SPAC29B12.11c |||human WW domain binding protein-2
ortholog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 366 SDHVSLENCCSFSPIAGVGILIVC 295
SD + LEN C F GV I I+C
Sbjct: 14 SDILLLENECMFDCFDGVAISILC 37
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 9.6
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 339 NNSPKKRDQTHIEQNGEDS 395
NN+ KK D+ ++E+N E++
Sbjct: 89 NNNDKKEDEDNVEENEEEA 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,176
Number of Sequences: 5004
Number of extensions: 59544
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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