Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0576
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18)                     31   0.83 
SB_44772| Best HMM Match : TPR_2 (HMM E-Value=0)                       29   3.3  
SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_52723| Best HMM Match : VWA (HMM E-Value=0.21)                      28   5.8  
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18)
          Length = 686

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +3

Query: 279 VTQKTNILLRYLHQQWEKKNNNSPKKRDQTHIEQNGEDSQQRKRPCLSSQIN*NPDNALT 458
           +T + N+LL   H       N  P+K     +  +G+  QQR      S  N   D  L+
Sbjct: 286 LTGQLNVLLVGAHNILTVVPNRDPRKSASFAMSPDGKFEQQRGSSKRKSGYNKWGDETLS 345

Query: 459 ISLCLIRELCRVYV 500
             LC + +L   YV
Sbjct: 346 TELCAVLKLDNTYV 359


>SB_44772| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 845

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 288 KTNILLRYLHQQWEKKNNNSPKKRDQTHIEQNGEDSQQR 404
           K N+L+ Y H Q E ++ +S     Q     NGE   +R
Sbjct: 150 KLNLLIGYKHYQQELRSQHSLPSNGQVRQTHNGESGDER 188


>SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 318  QQWEKKNNNSPKKRDQTHIEQNGEDSQQRKRPCLSSQIN*NPDNALT 458
            ++ E  N N   K  ++ +E   ++ ++RKR       N NPD  LT
Sbjct: 1357 KEMEDMNKNWEDKVKESQLESRDKEEEKRKRQATPHLWNLNPDPQLT 1403


>SB_52723| Best HMM Match : VWA (HMM E-Value=0.21)
          Length = 353

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -2

Query: 157 SFKNSITDIVKNVQYTCRYTS 95
           S K  ITD VKNV  TC Y S
Sbjct: 226 SDKKKITDFVKNVSSTCGYDS 246


>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2141

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 270 QIIVTQKTNILLRYLHQQWEKKNNNSPKKRDQTHIEQNG 386
           ++ V +K   L +Y  Q+ E K NN  KKR+  +   NG
Sbjct: 521 EVEVCRKQTELAKYKLQEEETKTNNQVKKREDRYHWLNG 559


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,963,788
Number of Sequences: 59808
Number of extensions: 417363
Number of successful extensions: 1165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)