Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0576
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like (...    27   8.9  

>AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical
           protein Y32B12B.2 protein.
          Length = 789

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 315 HQQWEKKNNNSPKKRDQTHIEQNGEDSQQR 404
           H++WEKKN       D+   E+N +D + +
Sbjct: 661 HKKWEKKNKVMIDSDDEEEEEENDDDKENQ 690


>AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like (grd
           related) protein18 protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 594 IKIPKVTEPSEFHKSMYSFDLKLW---NINVICVQHTLCKV 481
           +++   T PS   + +YS   ++W   N+NVIC +H+   V
Sbjct: 382 MEMKMTTSPSISKQMIYSAATEMWMGRNVNVICSKHSFSYV 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,126,207
Number of Sequences: 27780
Number of extensions: 331600
Number of successful extensions: 932
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)