Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0576
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41560.1 68418.m05050 expressed protein                             37   0.014
At4g08200.1 68417.m01355 hypothetical protein                          29   2.1  
At1g20450.2 68414.m02549 dehydrin (ERD10) identical to dehydrin ...    29   3.6  
At5g52130.1 68418.m06470 hypothetical protein                          28   4.8  
At5g02750.1 68418.m00217 zinc finger (C3HC4-type RING finger) fa...    27   8.3  

>At5g41560.1 68418.m05050 expressed protein 
          Length = 101

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
 Frame = +3

Query: 150 LKDLPSYDANNFTLFN-TDHGIRNXL*KAIYIFTH*DI--PSEQIIVTQKTNILLRYLHQ 320
           L DLPS+D +NF+    +D    + +    Y  TH     P +Q+I T+  NIL+R  +Q
Sbjct: 5   LGDLPSFDPHNFSQHRPSDPSNPSKMVPTTYRPTHNRTLPPPDQVITTEVKNILIRSFYQ 64

Query: 321 QWEKKNNNSPKKRDQTHI 374
           + E+K    PK+    H+
Sbjct: 65  RAEEKLR--PKRPATDHL 80


>At4g08200.1 68417.m01355 hypothetical protein
          Length = 202

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 285 QKTNILLRYLHQQWEKKNNNSPKKRDQTHIEQNGE--DSQQ 401
           +K+NIL       WE+ +N+ P  +++  ++ +G+  DS+Q
Sbjct: 144 RKSNILDPDFEANWEQDDNHQPSLKEEVEVQDDGQIFDSRQ 184


>At1g20450.2 68414.m02549 dehydrin (ERD10) identical to dehydrin
           ERD10 (Low-temperature-induced protein LTI45)
           [Arabidopsis thaliana] SWISS-PROT:P42759
          Length = 259

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
 Frame = +3

Query: 300 LLRYLHQQWEKKNNNSPKKRDQTH--------IEQNGEDSQQRKR 410
           LL  LHQ+ E++  N P   D+ H        + + GED +++K+
Sbjct: 79  LLEQLHQKHEEEEENKPSLLDKLHRSNSSSSSVSKKGEDGEKKKK 123


>At5g52130.1 68418.m06470 hypothetical protein
          Length = 163

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 327 EKKNNNSPKKRDQTHIEQNGEDSQQRKRPCLSSQIN*NPDN 449
           E++ N S   + Q+H+  +  DS       L   +N +PDN
Sbjct: 58  EQELNRSTSTQQQSHVGSSSHDSSDDSTHSLPPDVNIDPDN 98


>At5g02750.1 68418.m00217 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 283

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 558 HKSMYSFDLKLWNINVICVQHTLCKVHELNTNLL 457
           H S Y+  +KL +++ + +   LC+ H+L+ ++L
Sbjct: 85  HHSSYAVTMKLRDLDAVVLLLFLCETHQLHPDVL 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,736,304
Number of Sequences: 28952
Number of extensions: 287450
Number of successful extensions: 708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)