Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0574
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   132   3e-31
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   3e-04
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.052
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     33   0.21 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                33   0.28 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.64 
SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  28   6.0  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  132 bits (318), Expect = 3e-31
 Identities = 72/138 (52%), Positives = 89/138 (64%)
 Frame = +3

Query: 255 CITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVT 434
           CITIKSTAIS+++EL E D  +IT P  ++  E+GFLINLIDSPGHVDFSSEVTAALRVT
Sbjct: 66  CITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVT 123

Query: 435 DGALXXXXXXXXXXXQTETVLRQAMPSASSLFCS*TKWTVLFLSSNLKLKNYTRRSSVL* 614
           DGAL           QTETVLRQA+           K     L   L  ++  +  + + 
Sbjct: 124 DGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIV 183

Query: 615 KMLNVIIATYNDDGGPMG 668
           + +NVIIATY+D+ GPMG
Sbjct: 184 ESINVIIATYSDEDGPMG 201



 Score =  124 bits (300), Expect = 5e-29
 Identities = 59/65 (90%), Positives = 62/65 (95%)
 Frame = +1

Query: 61  VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 240
           VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1   VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60

Query: 241 DEQDR 255
           DEQDR
Sbjct: 61  DEQDR 65


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +1

Query: 112  IRNMSVIAHVDHGKSTLTDSLVSKAGIIA 198
            +RN S++AHVDHGKSTL D L+   G I+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTIS 1969


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 20/85 (23%), Positives = 40/85 (47%)
 Frame = +1

Query: 58  MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 237
           + N+ ++ +  +MD    IRN+++  H+  GK+   D L  +      A+ G+    +T 
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171

Query: 238 KDEQDRASPLNLRPSLCSSSLKRKI 312
           +     A   NL  ++C + + R I
Sbjct: 172 R-LLKHAVQENLAITICINKIDRLI 195


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +3

Query: 264 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 443
           IK  A S F E+E +  + +        + +   IN++D+PGH DF+ +    L   D  
Sbjct: 48  IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSV 106

Query: 444 LXXXXXXXXXXXQTETVL 497
           +           QTE ++
Sbjct: 107 IVVIDVAKGVEEQTEKLV 124



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 97  DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 210
           D+ +  R   +I+H D GK+TLT+ L+   G I  A A
Sbjct: 5   DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGA 42


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 121 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 222
           ++++ HVDHGK+TL D+L   + + AG   G T+
Sbjct: 31  VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = +3

Query: 345 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAM 509
           K   G  I  ID+PGH  F+S       VTD  +           QT   +R AM
Sbjct: 71  KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAM 125


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 94  MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 189
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 121 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 222
           ++V+ HVDHGK++L D  +  A +I G   G T+
Sbjct: 94  VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126


>SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 151 KSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRASPLNL-RPSLCSSSLKR 306
           K+ + D+LV   GI+   R G   +TD    + +RA+     R SL +++LKR
Sbjct: 182 KTLIKDNLVGPKGIVVDPRTGLMFWTDKETPKIERATLAGRDRISLVTTALKR 234


>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1805

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
 Frame = +1

Query: 37  KNHK-PSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAG 213
           K H+ P  +   T    R M+  + N +++        GK+  T  ++     +AG   G
Sbjct: 139 KRHEVPPHIYAITDTAYRSMLQDREN-QSILCTGESGAGKTENTKKVIQYLAAVAGHSYG 197

Query: 214 ETRFTDTRKDEQDRASPLNLRPSLCSSSLKRKI 312
           +   T  + ++  ++ P ++  + C   L R +
Sbjct: 198 KVHATPQKTEKGGKSKPTSMTQTKCVGDLLRHV 230


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 439 PSVTRSAAVTSEEKSTCPGESIKLIKXPFSLFSRWSGFVMN 317
           P   R A        TCPGE ++L+       +RWS  V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLV-GQLGHRARWSSSVIN 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,036,202
Number of Sequences: 59808
Number of extensions: 388346
Number of successful extensions: 1056
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)