Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0573
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)                  29   4.4  
SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)
          Length = 1083

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 434 KSRLSSWLGVXGVAGLAAPPVTLRAVQSREQGHQDHHRGPAPR 306
           +SRL  +  +  V GL  PP  L ++  RE+   D + G APR
Sbjct: 662 RSRLQDY--ILAVQGLL-PPEALESISGREKAAGDSNEGDAPR 701


>SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 482 ALLAKELELDHSRALSKSRLSSWLGVXGVAGL 387
           ALLAK++  +H R L  S    WL V G  GL
Sbjct: 688 ALLAKQV-YEHERRLQSSATRRWLAVSGGIGL 718


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,075,021
Number of Sequences: 59808
Number of extensions: 308510
Number of successful extensions: 651
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)