Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0573
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain pro...    28   5.1  
AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain pro...    28   5.1  

>AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform b
           protein.
          Length = 792

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 352 AVSRDIRTTTEARRPGTARNTRRPKPTELSACCGSA 245
           + S  + T++ ARRP TA+      PT  +A   +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAAAAAAA 207


>AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform a
           protein.
          Length = 794

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 352 AVSRDIRTTTEARRPGTARNTRRPKPTELSACCGSA 245
           + S  + T++ ARRP TA+      PT  +A   +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAAAAAAA 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,852,286
Number of Sequences: 27780
Number of extensions: 216686
Number of successful extensions: 563
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)