Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0572
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.2  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   5.0  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   5.0  
SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    25   8.7  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   8.7  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -1

Query: 486 SKNPSQRLELQMIQAVAALASLLKPLIGFYCTCSISQKKNTRNLEEIKAISDCWPNHIYN 307
           S + S+R  L  ++  A L  + K    + C+CS+  +K     EE++ + D +   +  
Sbjct: 268 SLSESERRSLVKVEKEAVLQKM-KEQQKYSCSCSVCGRKRLAIEEELEVLYDAYYEELEQ 326

Query: 306 Y 304
           Y
Sbjct: 327 Y 327


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 499 EKNFVLHNTCHRYVVGYLVGFPGSYHRATYFLREAVNA 612
           E+  +  N   ++++GYL    G+  +ATY+  EA  A
Sbjct: 504 ERASMAGNANAQFLMGYLFDTRGNTEQATYWYNEAAKA 541


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 416 NHSSVFIVP-VLYPKKKTQEISKKLKQYQIVGQ 321
           N  S +I P +L PK++ + + ++ K YQ+  Q
Sbjct: 147 NQLSEYISPEILLPKRRLEHLLQQAKDYQVSSQ 179


>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 501 LIQGTSKNPSQRLELQMIQAVAALASLLKPLIGFYC 394
           LI GTS+NPS R  L    ++A L   L    G +C
Sbjct: 31  LISGTSRNPSVRPHL---FSMAILGFALTEATGLFC 63


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = -1

Query: 516 EHEVLLIQGTSKNPSQRLELQMIQAVAALASLLKPLIGFYCTCSISQKKNTRNLEEIKAI 337
           EH V  I+  ++  S+ L +        LA  ++ L    C  S  QK+  R  EEI  +
Sbjct: 65  EHNVRGIRAGARIDSE-LTVHGYNQAKKLAKSIRNL-DIVCVYSSPQKRAKRTAEEITKV 122

Query: 336 SDCWPNHIYNY 304
           ++C P +I ++
Sbjct: 123 ANC-PLYISDF 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,224
Number of Sequences: 5004
Number of extensions: 43432
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)