Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0572
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1015 - 10319858-10320411,10320508-10320880                       33   0.24 
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146           29   2.2  
06_03_1336 - 29424470-29424897,29425243-29429653                       29   3.9  
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267           29   3.9  
12_02_0343 - 17748882-17753396                                         28   5.1  
12_02_0346 - 17776871-17781445                                         28   6.8  
06_03_1332 - 29403320-29407804                                         28   6.8  
03_05_0885 - 28505628-28505767,28505892-28505970,28506048-285061...    27   8.9  

>12_01_1015 - 10319858-10320411,10320508-10320880
          Length = 308

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
 Frame = -1

Query: 588 IGSTVVTTREAHKISYHIPVT-RIVEHE-VLLIQGTSKNPSQRLELQMIQAVAALASLLK 415
           +G  ++  REA +I YH+ +  R+V H+  ++    S++     ++     VAAL  ++ 
Sbjct: 216 VGVMIILVREALEIVYHLLLKYRLVYHQHHVVTTAVSRHDDTTADVVRFSLVAALLHVI- 274

Query: 414 PLIGFYCTCSISQKKNTRN 358
            +  F CT  ++  + TRN
Sbjct: 275 -MQSFVCTMVLALYRETRN 292


>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
          Length = 855

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 577 GGNYPGSPQDILPHTCDTYCGARSSSHS 494
           GG+ P +  ++ P  C+   GA SSSH+
Sbjct: 522 GGSQPSNEGEVPPQDCNASAGAASSSHA 549


>06_03_1336 - 29424470-29424897,29425243-29429653
          Length = 1612

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = -1

Query: 525 RIVEHEVLLIQGTSKNPSQRLELQMIQAVAALASLLKPLIGFYCTCSISQKKNTRNLEEI 346
           +++ H  +L Q T +  +++L+   + A   +  LL+  + F    S+ + K     E  
Sbjct: 447 KLINHHAIL-QQTGEMIAKKLKGSPL-AAKTVGRLLRNHLDFNHWTSVLESKEW---ELQ 501

Query: 345 KAISDCWPNHIYNYNYLNFSIQPCFC-CGRIPKPY 244
              +D  P    +Y+YL F +Q CF  C   P+ Y
Sbjct: 502 TGDNDIMPALKLSYDYLPFHLQQCFIYCALFPEDY 536


>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
          Length = 769

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 577 GGNYPGSPQDILPHTCDTYCGARSSSHS 494
           GG+ P +  ++ P  C+   G  SSSHS
Sbjct: 489 GGSQPSNEGEVPPQDCNASTGVASSSHS 516


>12_02_0343 - 17748882-17753396
          Length = 1504

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 333 DCWPNHIYNYNYLNFSIQPCFC-CGRIPKPY 244
           D  P    +YNYL F +Q CF  C   P+ Y
Sbjct: 487 DIMPALKLSYNYLPFHLQQCFSYCALFPEDY 517


>12_02_0346 - 17776871-17781445
          Length = 1524

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 333 DCWPNHIYNYNYLNFSIQPCFC-CGRIPKPY 244
           D  P    +YNYL F +Q CF  C   P+ Y
Sbjct: 486 DIMPVLKLSYNYLPFHLQQCFSYCALFPEDY 516


>06_03_1332 - 29403320-29407804
          Length = 1494

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 336 SDCWPNHIYNYNYLNFSIQPCFC-CGRIPKPY 244
           +D  P    +Y+YL+F +Q CF  C   P+ Y
Sbjct: 515 NDIMPALKLSYDYLSFHLQQCFTYCALFPEDY 546


>03_05_0885 -
           28505628-28505767,28505892-28505970,28506048-28506163,
           28506588-28506654,28507361-28507456,28508729-28508838,
           28508983-28509070,28510109-28510183,28510401-28510445,
           28510521-28510595,28511392-28511763
          Length = 420

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 483 KNPSQRLELQMIQAVAALASLLKPLIGFYCTCSISQKK 370
           K+P+ R+ LQ +     +A    P++ ++C C   ++K
Sbjct: 374 KDPANRITLQAVGEHPWVAGDQGPVVEYFCRCGFGRRK 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,467,072
Number of Sequences: 37544
Number of extensions: 241723
Number of successful extensions: 479
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)