Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0572
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    26   0.34 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   7.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.6  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 264 HNKNRAVSRNLNSYNYKYDLANN 332
           HN N   + N N+YNY  +  NN
Sbjct: 91  HNNNNYNNNNYNNYNYNNNNYNN 113


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 511 VLHNTCHRYVVGYLVGFPG 567
           VL N+C++    Y  GFPG
Sbjct: 94  VLPNSCYQERYEYFPGFPG 112


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 511 VLHNTCHRYVVGYLVGFPG 567
           VL N+C++    Y  GFPG
Sbjct: 94  VLPNSCYQERYEYFPGFPG 112


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 490 SLNEKNFVLHNTCHRYVVGYLVGFPGSYHRATYFLREAV 606
           ++  ++ +L N   + V G+L GFPG    + Y + +A+
Sbjct: 6   AITTEDILLLNLTTQDVDGFLQGFPGK--NSPYTVTQAI 42


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 393 TCSISQKKNTRNLEEIKAISDCWPNHIYNY 304
           T +I Q+K+++NLE    +   W    Y++
Sbjct: 19  TSAIHQRKSSKNLEHSMNVIHEWKYIDYDF 48


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 509 KFFSFKEHQRIQVNVWNFK 453
           K + FKE+Q    N+ NFK
Sbjct: 149 KIWPFKEYQMNGNNITNFK 167


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 534 VCGRISCGLPG*LPPCYLFSPRSS 605
           VCGRI   + G  PP  L  P  S
Sbjct: 479 VCGRIENTIQGLPPPYRLNKPLMS 502


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 547 YLVGFPGSYHRATY 588
           YL+G PG  +  TY
Sbjct: 161 YLIGMPGKKNTITY 174


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 547 YLVGFPGSYHRATY 588
           YL+G PG  +  TY
Sbjct: 161 YLIGMPGKKNTITY 174


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 547 YLVGFPGSYHRATY 588
           YL+G PG  +  TY
Sbjct: 161 YLIGMPGKKNTITY 174


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 547 YLVGFPGSYHRATY 588
           YL+G PG  +  TY
Sbjct: 161 YLIGMPGKKNTITY 174


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 547 YLVGFPGSYHRATY 588
           YL+G PG  +  TY
Sbjct: 161 YLIGMPGKKNTITY 174


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 547 YLVGFPGSYHRATY 588
           YL+G PG  +  TY
Sbjct: 161 YLIGMPGKKNTITY 174


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 547 YLVGFPGSYHRATY 588
           YL+G PG  +  TY
Sbjct: 229 YLIGMPGKKNTITY 242


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 547 YLVGFPGSYHRATY 588
           YL+G PG  +  TY
Sbjct: 229 YLIGMPGKKNTITY 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,287
Number of Sequences: 438
Number of extensions: 3959
Number of successful extensions: 20
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)