Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0570
         (845 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   4.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   4.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   7.0  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 211 VLFNV*VSVLYSGKFIVRLLFHLMFKRLLFRDLILHSDSNCTVS 342
           +L NV   V Y G+ +  L      K  L   L  H+ SN TVS
Sbjct: 93  ILKNV-FGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSNLTVS 135


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 211 VLFNV*VSVLYSGKFIVRLLFHLMFKRLLFRDLILHSDSNCTVS 342
           +L NV   V Y G+ +  L      K  L   L  H+ SN TVS
Sbjct: 93  ILKNV-FGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSNLTVS 135


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 236  TETYTLNRTSAAAADS 189
            TET+T NRT +A ++S
Sbjct: 1001 TETHTNNRTHSATSNS 1016


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 46  QIDLEYDPLKIRAPAQSQAGPGGP 117
           Q  + YD  K++A A +Q G  GP
Sbjct: 130 QTQVVYDSCKLQAAAVTQNGVLGP 153


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,496
Number of Sequences: 336
Number of extensions: 3738
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)