Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0570
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    27   4.4  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    26   5.8  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    26   7.7  

>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 437 KVSKLDPFDRKCSAAAGSVEVREAFDL 357
           +++ L P    CSA AGS EV + +DL
Sbjct: 70  RITVLHPAISHCSACAGSKEVLQTWDL 96


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 79  VSSGDHTLSRSDLMYTYHSLSDWVS 5
           VSS   +LS SD + +Y SLSD VS
Sbjct: 65  VSSSSWSLSSSDSIMSYDSLSDDVS 89


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 785 ITQYGIXHKLFDKNLIL 735
           + QYG+ HKL  KNL+L
Sbjct: 135 VYQYGVNHKLSCKNLLL 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,909
Number of Sequences: 5004
Number of extensions: 60326
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)