Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0570
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   4.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 627  DGERHLLGPDRAHPTIACNHSQN 695
            +G    +GP   HPT A  HS++
Sbjct: 1753 NGHSGTMGPPVGHPTNASAHSRS 1775


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = -1

Query: 371 EAFDLTLGARDTVQLESECKIKSRKSSRLNIK*KSNLTINLPLYNTETYTLNRTSAAAAD 192
           E   + LGA  +   ES    +S +    N++ + N  +   +Y T +Y  +   +   D
Sbjct: 82  EVVAVALGALLSKGEESFPTARSLEKLLCNVEAEENYNLLEDIYETLSYDCDVDVSTFFD 141

Query: 191 SLRCAVLYRYCL 156
            L   V+Y  C+
Sbjct: 142 QLGQEVIYTACV 153


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 491  RHVNITGFNMGNK*SSTNKVS 429
            RH +I GFN+G + +S++  S
Sbjct: 1035 RHGDIQGFNVGYRETSSSNPS 1055


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 491  RHVNITGFNMGNK*SSTNKVS 429
            RH +I GFN+G + +S++  S
Sbjct: 1031 RHGDIQGFNVGYRETSSSNPS 1051


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,123
Number of Sequences: 438
Number of extensions: 4633
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)