Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0570
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08840.1 68414.m00984 DNA replication helicase, putative simi...    28   6.8  
At1g18210.2 68414.m02267 calcium-binding protein, putative simil...    28   9.0  
At1g18210.1 68414.m02266 calcium-binding protein, putative simil...    28   9.0  

>At1g08840.1 68414.m00984 DNA replication helicase, putative similar
           to helicase [Xenopus laevis] gi|18845092|gb|AAL79550
          Length = 1296

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 433 FLNSIHSIVSVLLPPDQLRFVRPSI*HSEPATQYSWSPSVKSNHGKAAV 287
           F+ + H+I  +++  +  RF   SI   +PA  Y WS    +N  + A+
Sbjct: 848 FVQNGHNIRKMIVDLEPPRFDNGSILSQDPAISYIWSEKSLNNDQRQAI 896


>At1g18210.2 68414.m02267 calcium-binding protein, putative similar
           to SP|Q9M7R0 Calcium-binding allergen Ole e 8
           (PCA18/PCA23) {Olea europaea}; contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain
          Length = 170

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 425 LDPFDRKCSAAAGSVEVREAFDL 357
           LD F   C +++ + E+R+AFDL
Sbjct: 77  LDEFSTLCRSSSSAAEIRDAFDL 99


>At1g18210.1 68414.m02266 calcium-binding protein, putative similar
           to SP|Q9M7R0 Calcium-binding allergen Ole e 8
           (PCA18/PCA23) {Olea europaea}; contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain
          Length = 170

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 425 LDPFDRKCSAAAGSVEVREAFDL 357
           LD F   C +++ + E+R+AFDL
Sbjct: 77  LDEFSTLCRSSSSAAEIRDAFDL 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,942,416
Number of Sequences: 28952
Number of extensions: 297324
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)