Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0568
(635 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 159 4e-38
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 95 1e-18
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 80 5e-14
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 76 8e-13
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 74 3e-12
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 74 3e-12
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 72 1e-11
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 70 4e-11
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 70 5e-11
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 69 7e-11
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 69 7e-11
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 69 9e-11
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 67 3e-10
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 65 2e-09
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 64 2e-09
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 64 4e-09
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 60 3e-08
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 60 4e-08
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 60 4e-08
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 6e-08
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 58 1e-07
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 57 4e-07
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 55 1e-06
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 2e-06
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 50 4e-05
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 48 1e-04
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 48 2e-04
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 48 2e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 47 3e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 6e-04
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 46 6e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 46 0.001
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 45 0.002
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 44 0.002
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 44 0.003
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 44 0.004
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 43 0.007
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 43 0.007
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 42 0.009
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.009
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.016
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 42 0.016
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 41 0.022
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 41 0.029
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 40 0.038
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.050
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 40 0.050
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.050
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.050
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 40 0.066
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 39 0.088
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 39 0.12
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.12
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 38 0.15
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.20
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.20
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.20
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 38 0.27
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 37 0.35
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 37 0.35
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 37 0.35
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 0.35
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.62
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.62
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.62
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 36 0.82
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 36 0.82
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 36 0.82
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 36 1.1
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 36 1.1
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 36 1.1
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 1.1
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 1.4
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 35 1.4
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.9
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 2.5
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 34 2.5
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 34 2.5
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 34 3.3
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 3.3
UniRef50_Q39G63 Cluster: Putative monooxygenase, FAD-binding; n=... 34 3.3
UniRef50_Q9VNR6 Cluster: CG11238-PA; n=2; Sophophora|Rep: CG1123... 33 4.4
UniRef50_A5P922 Cluster: Bacteriophage N4 receptor, inner membra... 33 5.8
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 5.8
UniRef50_A4YFL3 Cluster: Oligopeptide/dipeptide ABC transporter,... 33 5.8
UniRef50_Q2K614 Cluster: Hypothetical conserved protein; n=2; Rh... 33 7.6
UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein pr... 33 7.6
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 159 bits (387), Expect = 4e-38
Identities = 77/84 (91%), Positives = 81/84 (96%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
LVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQ
Sbjct: 81 LVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQ 140
Query: 435 VVNIPSFIVRLDSGKHIDFSLKSP 506
VVNIPSFIVRLDS KHIDFSL+SP
Sbjct: 141 VVNIPSFIVRLDSQKHIDFSLRSP 164
Score = 140 bits (339), Expect = 3e-32
Identities = 65/73 (89%), Positives = 71/73 (97%)
Frame = +1
Query: 37 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 216
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 217 PKRLFEGNALLRR 255
P+RLFEGNALLRR
Sbjct: 68 PRRLFEGNALLRR 80
Score = 42.3 bits (95), Expect = 0.009
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 GGGRPGRVKRKNLRKGQGG 565
GGGRPGRVKRKN +KGQGG
Sbjct: 166 GGGRPGRVKRKNAKKGQGG 184
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 95.5 bits (227), Expect = 1e-18
Identities = 48/96 (50%), Positives = 67/96 (69%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L +G+L Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+LIR + I+V KQ
Sbjct: 80 LHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQ 139
Query: 435 VVNIPSFIVRLDSGKHIDFSLKSPLVEVVLDVSRGR 542
VV++PSF+VR++S I + +PL ++ R R
Sbjct: 140 VVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKR 175
Score = 85.4 bits (202), Expect = 1e-15
Identities = 38/71 (53%), Positives = 52/71 (73%)
Frame = +1
Query: 43 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 222
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 223 RLFEGNALLRR 255
RL EG ALLRR
Sbjct: 69 RLLEGAALLRR 79
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 79.8 bits (188), Expect = 5e-14
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = +1
Query: 40 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 219
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 220 KRLFEGNALLR 252
+R+FEG ALLR
Sbjct: 59 RRIFEGEALLR 69
Score = 70.5 bits (165), Expect = 3e-11
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = +3
Query: 261 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 419
R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 73 RYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 75.8 bits (178), Expect = 8e-13
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 204
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLAL 61
Score = 57.6 bits (133), Expect = 2e-07
Identities = 30/74 (40%), Positives = 44/74 (59%)
Frame = +3
Query: 294 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 473
+D VL LK+ LERRLQT V++ GLA+S AR L+ HI + + V +P ++V
Sbjct: 94 IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGE 153
Query: 474 GKHIDFSLKSPLVE 515
I ++ KSP V+
Sbjct: 154 ETTISYAGKSPFVD 167
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 74.1 bits (174), Expect = 3e-12
Identities = 36/85 (42%), Positives = 57/85 (67%)
Frame = -1
Query: 509 QWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQ 330
+WR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S +++ L Q L LQ++ Q
Sbjct: 28 EWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQ 87
Query: 329 EVLNLQTKHIIEFHLFFIQYSNTNQ 255
E+ NLQ++ II+ L F Q +N++Q
Sbjct: 88 EIFNLQSQDIIQLLLVFRQDTNSHQ 112
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 73.7 bits (173), Expect = 3e-12
Identities = 35/67 (52%), Positives = 49/67 (73%)
Frame = +3
Query: 294 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 473
L+ VL L I +LERRLQ +VF AGLAKS+HHAR+LI R I ++ Q+V++P F+VR D
Sbjct: 98 LNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADK 157
Query: 474 GKHIDFS 494
I+++
Sbjct: 158 EPLIEYN 164
Score = 59.7 bits (138), Expect = 6e-08
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Frame = +1
Query: 43 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 222
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +P+
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPE 64
Query: 223 RL-FEGNALLRR 255
+ G +LLRR
Sbjct: 65 DIPINGRSLLRR 76
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 71.7 bits (168), Expect = 1e-11
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 207
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQ 62
Score = 64.1 bits (149), Expect = 3e-09
Identities = 37/87 (42%), Positives = 50/87 (57%)
Frame = +3
Query: 252 SLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 431
SL R G+L E +D VL LK+E L+RRLQTQV++ G A+S AR I HI +
Sbjct: 81 SLQRSGMLSENA-DIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGG 139
Query: 432 QVVNIPSFIVRLDSGKHIDFSLKSPLV 512
+ V IP + V + I ++ SPLV
Sbjct: 140 RRVTIPGYTVSAKEQEEISYAGSSPLV 166
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 70.1 bits (164), Expect = 4e-11
Identities = 39/87 (44%), Positives = 55/87 (63%)
Frame = +3
Query: 249 TSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 428
T L ++GVL E +LD VL L ++D LERRLQT + + GLAK++ AR I HI V
Sbjct: 74 TKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVN 132
Query: 429 KQVVNIPSFIVRLDSGKHIDFSLKSPL 509
+VV+ PS++V+ + I+F SPL
Sbjct: 133 GEVVDAPSYLVKKEEEDKIEFVPFSPL 159
Score = 41.5 bits (93), Expect = 0.016
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +1
Query: 61 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 210
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQ 59
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 69.7 bits (163), Expect = 5e-11
Identities = 34/70 (48%), Positives = 48/70 (68%)
Frame = +3
Query: 294 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 473
L+ ++ + + L RRLQT V + L+K+IH ARILI +HI+V+ Q+VN PSF+VR D+
Sbjct: 95 LESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDN 154
Query: 474 GKHIDFSLKS 503
I FSL S
Sbjct: 155 EIFISFSLNS 164
Score = 65.7 bits (153), Expect = 9e-10
Identities = 33/90 (36%), Positives = 54/90 (60%)
Frame = +1
Query: 40 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 219
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 220 KRLFEGNALLRRWFVLEYWMKNR*NSIMCL 309
K + +L WF +Y N N CL
Sbjct: 70 KIPSQSYGIL--WFCYKYNFMN--NMTFCL 95
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 69.3 bits (162), Expect = 7e-11
Identities = 37/84 (44%), Positives = 52/84 (61%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L R+G++++ LD +LGL E++LERRLQT V+K GLA++I+ AR LI HI + +
Sbjct: 77 LYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGR 136
Query: 435 VVNIPSFIVRLDSGKHIDFSLKSP 506
V P +IV IDF SP
Sbjct: 137 RVTSPGYIVMRGEEDLIDFYPTSP 160
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 204
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLAL 61
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 69.3 bits (162), Expect = 7e-11
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L + G+L + LD VL L +ED LERRLQT VF+ GLA++ AR LI HI V +
Sbjct: 78 LKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGR 137
Query: 435 VVNIPSFIVRLDSGKHIDFSLKSP 506
VV PS++V ++ I ++ SP
Sbjct: 138 VVTAPSYMVTVEEEDKISYAKNSP 161
Score = 58.8 bits (136), Expect = 1e-07
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +1
Query: 40 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT-LEEKD 216
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++ E+
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLISDRTEQG 67
Query: 217 PKRLFEGNALLRRWFVLE 270
K + +L+++ +L+
Sbjct: 68 AKEAVQLFNVLKKYGILK 85
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 68.9 bits (161), Expect = 9e-11
Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Frame = +3
Query: 255 LVRIGVLDEKQMK------LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRH 416
LV G+L E +MK + GL+I F E++LQTQVF+ L KSI HA +L+ H
Sbjct: 81 LVHTGLLGEGKMKPRRSWFTSWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCH 139
Query: 417 IRVRKQVVNIPSFIVRLDSGKHIDF 491
IR+ KQVV+I F V LDS KH DF
Sbjct: 140 IRIGKQVVDIAFFFVGLDSRKHTDF 164
Score = 53.2 bits (122), Expect = 5e-06
Identities = 27/40 (67%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Frame = +1
Query: 139 EVWRVKYTLARIRKAARE-LLTLEEKDPKRLFEGNALLRR 255
EVWRVK+TL +IRKA E LL L EKDP+ LFE N LLR+
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQ 80
Score = 36.3 bits (80), Expect = 0.62
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 509 GGGRPGRVKRKNLRKGQGG 565
GGG PG VKRKN++KG+GG
Sbjct: 171 GGGYPGSVKRKNVKKGRGG 189
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 67.3 bits (157), Expect = 3e-10
Identities = 32/69 (46%), Positives = 46/69 (66%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L ++G +++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI H+ V +
Sbjct: 79 LYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGR 138
Query: 435 VVNIPSFIV 461
V P F+V
Sbjct: 139 RVTSPGFLV 147
Score = 50.8 bits (116), Expect = 3e-05
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +1
Query: 61 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLFE 234
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEMPF 75
Query: 235 GNALLRRWFV 264
L + F+
Sbjct: 76 KEKLYKMGFI 85
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 64.9 bits (151), Expect = 2e-09
Identities = 33/88 (37%), Positives = 51/88 (57%)
Frame = +3
Query: 249 TSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 428
+ L+R G++ + +D +L LK E+ LERRLQTQV + GLA+++ AR I HI +
Sbjct: 84 SKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAIN 142
Query: 429 KQVVNIPSFIVRLDSGKHIDFSLKSPLV 512
+ IP +V + HI + SPL+
Sbjct: 143 GRKATIPGMLVSKEDEMHIGYYGSSPLM 170
Score = 59.7 bits (138), Expect = 6e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 198
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 64.5 bits (150), Expect = 2e-09
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 195
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYL 58
Score = 59.7 bits (138), Expect = 6e-08
Identities = 39/105 (37%), Positives = 53/105 (50%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L R +L +K LD VL L +E+ L+RRLQT VFK LA S AR LI HI V +
Sbjct: 80 LSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGR 138
Query: 435 VVNIPSFIVRLDSGKHIDFSLKSPLVEVVLDVSRGRTSARDRVAE 569
V +P +V I + SP+ + + + S +RV E
Sbjct: 139 RVTVPGMLVEAQYEDTIAYYENSPIANELHPIRQALLSPAERVKE 183
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 63.7 bits (148), Expect = 4e-09
Identities = 36/85 (42%), Positives = 48/85 (56%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L R G+L ++ LD VL L +E LERRLQT VF+ GLA + AR I HI V +
Sbjct: 77 LNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGK 136
Query: 435 VVNIPSFIVRLDSGKHIDFSLKSPL 509
+N PS++V L I + SP+
Sbjct: 137 KINAPSYLVPLVEEDAISYMPNSPM 161
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT-LE 207
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTS 63
Query: 208 EKDPKRLFEGNALLRRWFVL 267
+ K + +L R+ +L
Sbjct: 64 AQGEKEAVQLFGILNRYGIL 83
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 60.5 bits (140), Expect = 3e-08
Identities = 34/87 (39%), Positives = 50/87 (57%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L RIG+L E++ +LD VL L++ D LERRLQT V++ GLA ++ AR + H+ V
Sbjct: 74 LQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGS 132
Query: 435 VVNIPSFIVRLDSGKHIDFSLKSPLVE 515
V PS+ V + + F S L +
Sbjct: 133 RVTEPSYTVPVSEENTLAFDETSDLTD 159
Score = 52.0 bits (119), Expect = 1e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +1
Query: 28 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 198
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL 59
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 60.1 bits (139), Expect = 4e-08
Identities = 33/61 (54%), Positives = 37/61 (60%)
Frame = -2
Query: 508 NGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFARPALNTCVCRRRSK 329
+G+ KSMC S RT G FT CL TRI RIK A D ARP+L T VC+RRSK
Sbjct: 58 SGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKTSVCKRRSK 117
Query: 328 K 326
K
Sbjct: 118 K 118
Score = 34.7 bits (76), Expect = 1.9
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -3
Query: 150 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 46
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 60.1 bits (139), Expect = 4e-08
Identities = 30/87 (34%), Positives = 50/87 (57%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L +G+L E KL+ VL LK++D +ERRLQT +++ G A SI AR I HI + +
Sbjct: 84 LQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGR 142
Query: 435 VVNIPSFIVRLDSGKHIDFSLKSPLVE 515
+ +P ++V + + + SP+ +
Sbjct: 143 KITVPGYLVLKSEEDMLSYYVGSPITK 169
Score = 57.6 bits (133), Expect = 2e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 198
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALL 59
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 6e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +1
Query: 142 VWRVKYTLARIRKAARELLTLEEKDPKRLF 231
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 58.4 bits (135), Expect = 1e-07
Identities = 31/79 (39%), Positives = 45/79 (56%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
LVR G + KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ + HI + +
Sbjct: 77 LVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGK 135
Query: 435 VVNIPSFIVRLDSGKHIDF 491
+N P +V ++IDF
Sbjct: 136 KINAPGHLVEKADEENIDF 154
Score = 49.2 bits (112), Expect = 8e-05
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +1
Query: 46 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 207
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMD 62
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 56.8 bits (131), Expect = 4e-07
Identities = 37/106 (34%), Positives = 54/106 (50%)
Frame = +3
Query: 252 SLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 431
SL RIG++ K LD VL L++ D L RRLQT V K + + AR + HI +
Sbjct: 76 SLARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISD 134
Query: 432 QVVNIPSFIVRLDSGKHIDFSLKSPLVEVVLDVSRGRTSARDRVAE 569
+VV IPS+ V ++ I + S ++ R +AR+ AE
Sbjct: 135 RVVTIPSYTVYVEEEGDIKLTGGSAFATILEKSKRAEAAAREAAAE 180
Score = 52.4 bits (120), Expect = 9e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 210
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 211 KDPKR 225
+ +R
Sbjct: 64 EVRER 68
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 55.2 bits (127), Expect = 1e-06
Identities = 32/69 (46%), Positives = 43/69 (62%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
+V+ G+L E L+ VL + FLERRLQT VFK GLA++I AR LI I V +
Sbjct: 75 MVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMK 133
Query: 435 VVNIPSFIV 461
V+IP ++V
Sbjct: 134 RVSIPGYMV 142
Score = 40.3 bits (90), Expect = 0.038
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +1
Query: 46 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 201
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLS 60
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +3
Query: 276 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 383
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 50.4 bits (115), Expect = 4e-05
Identities = 29/72 (40%), Positives = 42/72 (58%)
Frame = +3
Query: 309 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 488
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
Query: 489 FSLKSPLVEVVL 524
+S + +VL
Sbjct: 143 IKPESLNLPIVL 154
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 48.4 bits (110), Expect = 1e-04
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +3
Query: 270 VLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 449
+ +E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI
Sbjct: 67 IYEEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIA 125
Query: 450 SFIVRL-DSGKHIDFSLKSPLVEVVLD 527
SF V++ D I+ S L+++ ++
Sbjct: 126 SFRVKVGDIVSVIENSKNVELIKLAVE 152
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 48.0 bits (109), Expect = 2e-04
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +3
Query: 279 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 458
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 459 VRL-DSGKHIDFSLKSPLVEVVLDVSRGRT 545
VR D D S LV+ LD +RG T
Sbjct: 137 VRPGDVVSLKDSSRSKALVQRFLDGARGET 166
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 47.6 bits (108), Expect = 2e-04
Identities = 29/75 (38%), Positives = 40/75 (53%)
Frame = +3
Query: 303 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 482
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 483 IDFSLKSPLVEVVLD 527
I+F KS ++ V D
Sbjct: 140 IEFRQKSRNLDAVAD 154
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 40 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 198
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 47.2 bits (107), Expect = 3e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +3
Query: 306 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 464
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 6e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +3
Query: 303 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 455
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 46.4 bits (105), Expect = 6e-04
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +3
Query: 423 VRKQVVNIPSFIVRLDSGKHIDFSLKSPL 509
V +Q+VNIPSFIVRL+S KHI FSL SPL
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPL 55
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 45.6 bits (103), Expect = 0.001
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +3
Query: 282 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 461
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 462 R 464
+
Sbjct: 152 K 152
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +3
Query: 282 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 461
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++V
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 462 R 464
+
Sbjct: 113 K 113
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 44.4 bits (100), Expect = 0.002
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +3
Query: 303 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 461
V G + LERRL VF+AG A S AR ++R +HI + + V+IPS+ V
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSYQV 140
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 44.0 bits (99), Expect = 0.003
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Frame = +3
Query: 309 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 488
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V + G I+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIE 146
Query: 489 FSLKS---PLVEVVLDVSRGRTSARDRVAERQ**RGRLIR 599
KS P ++ L+ R+ ++ RGR++R
Sbjct: 147 IKEKSRDIPFIKENLENVDPRSIPSWLELDKDNFRGRVVR 186
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 43.6 bits (98), Expect = 0.004
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = +3
Query: 330 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPL 509
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKSRK 143
Query: 510 VEVVLD 527
E+ ++
Sbjct: 144 TEMFVN 149
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 42.7 bits (96), Expect = 0.007
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 327 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 506
F RRL T + + + + A I Q HIRV VVNIP++ V + HI ++ S
Sbjct: 116 FCRRRLATVLVQRKFCEHLKQAVTYIEQGHIRVGLDVVNIPAYHVTRELEDHITWAQGSK 175
Query: 507 LVEVVLDVSRGR 542
+ E V+D + R
Sbjct: 176 IKEKVVDFTGAR 187
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 42.7 bits (96), Expect = 0.007
Identities = 27/73 (36%), Positives = 40/73 (54%)
Frame = +3
Query: 309 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 488
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 489 FSLKSPLVEVVLD 527
KS ++ V D
Sbjct: 142 LRDKSKNLQQVKD 154
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 42.3 bits (95), Expect = 0.009
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = +3
Query: 303 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 482
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ L G
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSY--SLKPGDI 138
Query: 483 IDFSLKSPLVEVVLDVSRGR 542
+ +S +E + + GR
Sbjct: 139 VSVRERSKSLEAITNSLAGR 158
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.009
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +3
Query: 279 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 455
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.5 bits (93), Expect = 0.016
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 309 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 455
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 41.5 bits (93), Expect = 0.016
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +3
Query: 291 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 470
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP + ++
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLVNQII 254
Query: 471 SGKHIDFSLKSPLV 512
+ + LV
Sbjct: 255 DSNWVGLKINELLV 268
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 41.1 bits (92), Expect = 0.022
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +3
Query: 279 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 458
EK + G + LERRL V++ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYT 134
Query: 459 VRL 467
VR+
Sbjct: 135 VRV 137
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 40.7 bits (91), Expect = 0.029
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +3
Query: 273 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 452
L+ KQ + G LE RL +F G+A +I AR L+ RHI V +V+IPS
Sbjct: 35 LEAKQRRTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPS 94
Query: 453 F 455
+
Sbjct: 95 Y 95
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 40.3 bits (90), Expect = 0.038
Identities = 25/71 (35%), Positives = 36/71 (50%)
Frame = +3
Query: 309 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 488
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 489 FSLKSPLVEVV 521
F + VV
Sbjct: 147 FHAAHQKLAVV 157
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 39.9 bits (89), Expect = 0.050
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +3
Query: 282 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 461
K K++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V
Sbjct: 70 KARKMNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRV 129
Query: 462 R 464
+
Sbjct: 130 K 130
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 39.9 bits (89), Expect = 0.050
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +3
Query: 309 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 455
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.050
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 324 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 467
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 39.9 bits (89), Expect = 0.050
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +3
Query: 309 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 455
GL + LE RL VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 83 GLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 39.5 bits (88), Expect = 0.066
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +3
Query: 327 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 506
F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASK 164
Query: 507 LVEVVLDVSRGR 542
+ + V+D + R
Sbjct: 165 IKKHVMDYNNTR 176
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 39.1 bits (87), Expect = 0.088
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +3
Query: 273 LDEKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 437
L E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +
Sbjct: 59 LKENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSIL 118
Query: 438 VNIPSFIV 461
V PSFI+
Sbjct: 119 VKKPSFIL 126
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 38.7 bits (86), Expect = 0.12
Identities = 18/77 (23%), Positives = 43/77 (55%)
Frame = +3
Query: 330 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPL 509
LE+R+ + ++G +S++ AR +I +H+ V ++ ++P +++ + G I F S
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINV--GDIISFKEGSMK 201
Query: 510 VEVVLDVSRGRTSARDR 560
+++ + +G S + R
Sbjct: 202 RKLLKRLKKGLISKKSR 218
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.12
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 309 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 455
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 38.3 bits (85), Expect = 0.15
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +3
Query: 291 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 470
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISLG 141
Query: 471 SGKHIDFSLKS-PLVEVVLD 527
S + + PLV++ L+
Sbjct: 142 SVVELKPRAHNLPLVKLALE 161
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.20
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +3
Query: 330 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 464
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.9 bits (84), Expect = 0.20
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +3
Query: 279 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 458
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 459 V 461
V
Sbjct: 136 V 136
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.20
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 309 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 455
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 37.5 bits (83), Expect = 0.27
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +3
Query: 309 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 488
G + LERRL V++A ++ AR + H+ V + VNIPS+ R+ G I+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSY--RVKEGDVIE 142
Query: 489 FSLKSPLVEVVLD 527
+S + VL+
Sbjct: 143 VRERSKQLASVLE 155
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 37.1 bits (82), Expect = 0.35
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = +3
Query: 330 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPL 509
LERRL V++A A +I AR L+ HIRV NI S R++ G I K+
Sbjct: 92 LERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS--RRVNPGDEISLGSKAQE 149
Query: 510 VEVVLD 527
+ +VL+
Sbjct: 150 MALVLE 155
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.1 bits (82), Expect = 0.35
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 330 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 464
LE RL V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 37.1 bits (82), Expect = 0.35
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 330 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHI-DFSLKSP 506
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V + + + S K+
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQVSVGQVISVREKSAKNS 149
Query: 507 LVEVVLDVS 533
+ L+VS
Sbjct: 150 AIAESLEVS 158
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 0.35
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +3
Query: 303 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 464
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.3 bits (80), Expect = 0.62
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 330 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 455
LE RL VF+ +A +I AR LI HI + K+ V IPS+
Sbjct: 109 LEMRLDNIVFRLHMAPTIKAARQLISHGHILINKKKVTIPSY 150
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 36.3 bits (80), Expect = 0.62
Identities = 22/90 (24%), Positives = 43/90 (47%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L +GVL K D + + RRL + + +A++I A I Q H+RV
Sbjct: 82 LYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPN 141
Query: 435 VVNIPSFIVRLDSGKHIDFSLKSPLVEVVL 524
++N P+++V + ++ + S + + +L
Sbjct: 142 LINDPAYLVTRNMEDYVTWVDNSKIKKTLL 171
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 36.3 bits (80), Expect = 0.62
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 327 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 506
F RRL T + K +A+ + A + Q H+RV VV P+F+V + + S
Sbjct: 106 FCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSK 165
Query: 507 LVEVVLDVSRGR 542
+ VL+ + R
Sbjct: 166 IKRHVLEYNEER 177
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 35.9 bits (79), Expect = 0.82
Identities = 26/80 (32%), Positives = 37/80 (46%)
Frame = +3
Query: 222 EIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 401
E+ RR S L +GV+D Q LD + L L RRL + K + + I
Sbjct: 72 ELTRR--LSRILYDMGVVDNAQASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRF 129
Query: 402 IRQRHIRVRKQVVNIPSFIV 461
++Q H+RV VV P+ V
Sbjct: 130 VKQGHVRVGPNVVVNPALHV 149
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 35.9 bits (79), Expect = 0.82
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 444 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASAD 340
CS L H +FWH GW+SP Q TPA+A+
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 35.9 bits (79), Expect = 0.82
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 309 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 455
G ++ LE RL V++ G A S AR +R H++V + V+IPS+
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 35.5 bits (78), Expect = 1.1
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L +GV+ + L + + DF RRL V + + A LI+Q HI+V
Sbjct: 82 LYDLGVIILPEKGLHMIDVIHASDFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPD 141
Query: 435 VVNIPSFIV 461
V+ P++IV
Sbjct: 142 VIRNPAYIV 150
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 35.5 bits (78), Expect = 1.1
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 109 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRWFVLEYWMKNR 288
I +YGLR++ E + + ++RK A L L+E DP R L+ R + + +KNR
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGV-IKNR 90
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 35.5 bits (78), Expect = 1.1
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 324 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 467
+ LE+RL VF+ G A SI AR L+ + V + VNI S I+++
Sbjct: 91 NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKKVNIGSQIIKV 138
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 35.5 bits (78), Expect = 1.1
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 309 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 455
GL + LE RL V++AG A ++ AR L+ H++V + V I S+
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 35.1 bits (77), Expect = 1.4
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 312 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 491
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 492 SLKSPLVE 515
+ S +++
Sbjct: 135 ADGSKILK 142
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 35.1 bits (77), Expect = 1.4
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +3
Query: 264 IGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 443
+G++ K L+ + F RRL + + +++++ HA +I H+RV VV
Sbjct: 85 LGLIPTK-WDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVK 143
Query: 444 IPSFIV 461
P+F+V
Sbjct: 144 DPAFLV 149
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.9
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 309 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 455
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 2.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 371 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 466
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 34.3 bits (75), Expect = 2.5
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 76 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRR 255
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L NA+L +
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL---NAILEQ 671
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 34.3 bits (75), Expect = 2.5
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +3
Query: 330 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 491
+E+RL ++++G K+I AR R I V +V IPS I L+SG I +
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISY 251
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 33.9 bits (74), Expect = 3.3
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L +G++ KQ L + F RRL + K +A+++ A ++ HIRV +
Sbjct: 38 LYNMGIVPTKQ-NLALCDNVSASSFCRRRLPVVMVKIKMAETVESAVKFVQHGHIRVGPE 96
Query: 435 VVNIPSFIV 461
+V P+F+V
Sbjct: 97 LVLDPAFLV 105
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 3.3
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +3
Query: 318 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 479
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_Q39G63 Cluster: Putative monooxygenase, FAD-binding; n=1;
Burkholderia sp. 383|Rep: Putative monooxygenase,
FAD-binding - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 374
Score = 33.9 bits (74), Expect = 3.3
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +1
Query: 4 LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKII--GEYGLRNKREVWRVKYTLARIR 177
L ++ + R+P+VFS+ + R PF +A D G L +T +
Sbjct: 260 LRQLASERLPAVFSQLVLATRAPFVQAIFDALSPHFAHGRVALVGDAACTVRPHTASGTS 319
Query: 178 KAARELLTLEEKDPKRLFEGNALLRRWFV 264
KAAR+ ++L E P + A L RW +
Sbjct: 320 KAARDAVSLAESLPADATDVVARLARWSI 348
>UniRef50_Q9VNR6 Cluster: CG11238-PA; n=2; Sophophora|Rep:
CG11238-PA - Drosophila melanogaster (Fruit fly)
Length = 585
Score = 33.5 bits (73), Expect = 4.4
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -1
Query: 359 EHLRLQTTLQEV---LNLQTKHIIEFHLFFIQYSNTNQRRRRALPSNN 225
E+ RLQ LQE LNLQT+ EF +Q S T++RR + N
Sbjct: 423 ENERLQRELQEARAELNLQTRRASEFEQQLLQLSETSRRREALATTTN 470
>UniRef50_A5P922 Cluster: Bacteriophage N4 receptor, inner membrane
subunit; n=1; Erythrobacter sp. SD-21|Rep: Bacteriophage
N4 receptor, inner membrane subunit - Erythrobacter sp.
SD-21
Length = 698
Score = 33.1 bits (72), Expect = 5.8
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 243 PSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 398
PS ++++ V+ +Q D+V G ++DF E + V + LAKS+ A +
Sbjct: 181 PSRDMIQLPVVSLEQRFTDFVAGTYMDDFAESHAKDLVVRQMLAKSVPSAGV 232
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 33.1 bits (72), Expect = 5.8
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +3
Query: 330 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 461
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ ++
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_A4YFL3 Cluster: Oligopeptide/dipeptide ABC transporter,
ATPase subunit; n=1; Metallosphaera sedula DSM 5348|Rep:
Oligopeptide/dipeptide ABC transporter, ATPase subunit -
Metallosphaera sedula DSM 5348
Length = 310
Score = 33.1 bits (72), Expect = 5.8
Identities = 18/79 (22%), Positives = 41/79 (51%)
Frame = +3
Query: 306 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHI 485
LG K +D ++ L G+A H +++ I + + +++ P FIV + ++
Sbjct: 119 LGEKGDDKVDEVLSLVGLDPGVATRFPHEFSGGQRQRIAIARSLISDPKFIVLDEPTSNL 178
Query: 486 DFSLKSPLVEVVLDVSRGR 542
D S+++ ++ ++LD+ R
Sbjct: 179 DVSIQAQILNLLLDIQERR 197
>UniRef50_Q2K614 Cluster: Hypothetical conserved protein; n=2;
Rhizobium|Rep: Hypothetical conserved protein -
Rhizobium etli (strain CFN 42 / ATCC 51251)
Length = 296
Score = 32.7 bits (71), Expect = 7.6
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 97 ELKIIGEYGLRNKREVWRVKYT-LARIRKAARELLTLEEKDPKRLFEGNALLRRWFVLEY 273
E +IG LR RE + + T L R+ A + ++ +P R +G+ L R F+LEY
Sbjct: 206 ERVVIGPLSLRELREQFMISNTHLKRLLTQAATMESVGWTEPSR--KGDFWLSRRFILEY 263
Query: 274 W 276
W
Sbjct: 264 W 264
>UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3, putative; n=6; Trypanosomatidae|Rep: U3
small nucleolar ribonucleoprotein protein IMP3, putative
- Trypanosoma brucei
Length = 226
Score = 32.7 bits (71), Expect = 7.6
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L +G+++EK + L V + +E F +RRL T + +A + A + H+RV
Sbjct: 128 LYAMGLINEK-LGLAEVDKVGVEVFCKRRLPTVLRDLNMAPNCKIAADFVHHGHVRVGTS 186
Query: 435 VVNIPSFIVRLD 470
+ P+F+V D
Sbjct: 187 QIRDPAFLVPRD 198
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,428,527
Number of Sequences: 1657284
Number of extensions: 12558960
Number of successful extensions: 35504
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 34279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35497
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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