Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0568
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.) 154 5e-38
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4) 28 7.3
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45) 28 7.3
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 28 7.3
SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26) 27 9.7
SB_42145| Best HMM Match : Candida_ALS (HMM E-Value=0.36) 27 9.7
SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9) 27 9.7
>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 154 bits (374), Expect = 5e-38
Identities = 73/84 (86%), Positives = 79/84 (94%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
LVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQ
Sbjct: 78 LVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQ 137
Query: 435 VVNIPSFIVRLDSGKHIDFSLKSP 506
+VN+PSF+VRLDS KHIDFSL SP
Sbjct: 138 LVNVPSFVVRLDSQKHIDFSLNSP 161
Score = 138 bits (334), Expect = 3e-33
Identities = 66/73 (90%), Positives = 69/73 (94%)
Frame = +1
Query: 37 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 216
V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5 VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64
Query: 217 PKRLFEGNALLRR 255
P+RLFEGNALLRR
Sbjct: 65 PRRLFEGNALLRR 77
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +2
Query: 509 GGGRPGRVKRKNLRKGQGG 565
GGGRPGRVKRKN++KGQGG
Sbjct: 163 GGGRPGRVKRKNMKKGQGG 181
>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 64 RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 222
+RP K L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 57 KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109
>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L +G++ K+ L + F RRL + +A+ + A I Q H+RV +
Sbjct: 82 LHNMGLISTKK-NLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPE 140
Query: 435 VVNIPSFIV 461
V+ P+F+V
Sbjct: 141 VIMDPAFLV 149
>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
Length = 259
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 444 CSQLACGHEYAFAGSKFWHDGWTSP 370
C++LA Y++ G +FW + W+ P
Sbjct: 72 CARLAEQKNYSYFGVQFWGECWSGP 96
>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
Length = 454
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 79 KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 222
K L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 2 KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49
>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
Length = 884
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 401
L++I D+K M+ +Y+LGL +E +R +++ + K H R L
Sbjct: 806 LLQILTQDDKNMEAEYLLGLILERQGKRLEAMKLYMDVIRKDTSHVRAL 854
>SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)
Length = 600
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 446 DVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLN 318
D+ + A MP P +G+ D + Q +FE +++ T VL+
Sbjct: 381 DLEKVKAICEMPQPVDIAGVQDLIAQEAFEKIKMMITKAPVLH 423
>SB_42145| Best HMM Match : Candida_ALS (HMM E-Value=0.36)
Length = 542
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 266 WSTG*KTDETRLCAWSED*GLLGASSADAGVQSWP 370
WS G KT+ET + W G +A+ + WP
Sbjct: 298 WSNGFKTEETAITTWPN-----GFKTAETTITRWP 327
>SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)
Length = 349
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 505 HWWRSSWTCQEEEPPQGTGWRSAN 576
HWW+ + CQ P G RS N
Sbjct: 32 HWWKCNGPCQNRPPFYGVVKRSMN 55
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,113,945
Number of Sequences: 59808
Number of extensions: 400657
Number of successful extensions: 1038
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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