Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0568
(635 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 134 6e-32
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 131 3e-31
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei... 34 0.069
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 3.4
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 4.5
At1g43730.1 68414.m05028 hypothetical protein 28 4.5
At5g01850.1 68418.m00104 protein kinase, putative similar to pro... 28 6.0
At1g69580.1 68414.m08003 myb family transcription factor contain... 25 7.0
At5g41310.1 68418.m05020 kinesin motor protein-related 27 7.9
At5g28615.1 68418.m03493 hypothetical protein 27 7.9
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 134 bits (323), Expect = 6e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +3
Query: 261 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 440
R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+LIRQRHIRV KQ+V
Sbjct: 84 RYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLV 143
Query: 441 NIPSFIVRLDSGKHIDFSLKSP 506
NIPSF+VRLDS KHIDF+L SP
Sbjct: 144 NIPSFMVRLDSQKHIDFALTSP 165
Score = 118 bits (284), Expect = 3e-27
Identities = 51/72 (70%), Positives = 64/72 (88%)
Frame = +1
Query: 40 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 219
+ KT+ PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10 YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69
Query: 220 KRLFEGNALLRR 255
+R+FEG ALLRR
Sbjct: 70 RRIFEGEALLRR 81
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 4/24 (16%)
Frame = +2
Query: 509 GGGRPGRVKRKN----LRKGQGGG 568
GGGRPGRVKR+N +K GGG
Sbjct: 167 GGGRPGRVKRRNEKSASKKASGGG 190
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 131 bits (317), Expect = 3e-31
Identities = 61/82 (74%), Positives = 73/82 (89%)
Frame = +3
Query: 261 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 440
R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHHAR+LIRQRHIRV +Q+V
Sbjct: 84 RYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLV 143
Query: 441 NIPSFIVRLDSGKHIDFSLKSP 506
NIPSF+VR++S KH+DFSL SP
Sbjct: 144 NIPSFMVRVESQKHVDFSLTSP 165
Score = 121 bits (292), Expect = 3e-28
Identities = 56/81 (69%), Positives = 68/81 (83%)
Frame = +1
Query: 13 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 192
MVN R + KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60
Query: 193 LLTLEEKDPKRLFEGNALLRR 255
LLTL+EK+P+R+FEG ALLRR
Sbjct: 61 LLTLDEKNPRRIFEGEALLRR 81
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 509 GGGRPGRVKRKNLRKG 556
GGGRPGRVKR+N R G
Sbjct: 167 GGGRPGRVKRRNERAG 182
>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
40S RIBOSOMAL PROTEINs - different species
Length = 182
Score = 34.3 bits (75), Expect = 0.069
Identities = 24/91 (26%), Positives = 40/91 (43%)
Frame = +3
Query: 255 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 434
L +GV+ ++ L L + F RRL T + A+ A I Q H+RV +
Sbjct: 81 LYNMGVIPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPE 139
Query: 435 VVNIPSFIVRLDSGKHIDFSLKSPLVEVVLD 527
+ P+F+V + I + S + VL+
Sbjct: 140 TITDPAFLVTRNMEDFITWVDSSKIKRKVLE 170
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 46 KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 162
K ++ PRR P + Q E K EYG RN E W + T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 284 TDETRLCAWSED*GLLGASSADAGVQSW 367
T E CAWS LL + S DA + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 28.3 bits (60), Expect = 4.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 402 SKFWHDGWTSPGQL 361
+KFWHD WT G L
Sbjct: 77 AKFWHDNWTGHGPL 90
>At5g01850.1 68418.m00104 protein kinase, putative similar to
protein kinase [Arabidopsis thaliana]
gi|1054633|emb|CAA63387; contains protein kinase domain,
Pfam:PF00069
Length = 333
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -1
Query: 503 RFQREVNVLARVQAHN 456
RF REVN+++RVQ HN
Sbjct: 62 RFVREVNMMSRVQHHN 77
>At1g69580.1 68414.m08003 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 332
Score = 25.0 bits (52), Expect(2) = 7.0
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 402 IRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPLVEVVLDVSRG-RTSARDRVAERQ 575
I Q V + + + +LD+ +++ S++ PL+E+ +V +G + S D V Q
Sbjct: 237 ISQLRCSVESSLTSSETSETKLDTDNNLNKSIELPLMEINSEVMKGKKRSINDVVCVEQ 295
Score = 21.0 bits (42), Expect(2) = 7.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 225 IVRR*CPSTSLVRIGVLDEKQ 287
+V R CPSTS + ++E++
Sbjct: 203 MVNRGCPSTSFSELTQVEEEE 223
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 346 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHH 453
RRR S A S + F G F+ AS++ TSHH
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHH 176
>At5g28615.1 68418.m03493 hypothetical protein
Length = 149
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 402 SKFWHDGWTSPGQL 361
+KFWHD WT G L
Sbjct: 9 AKFWHDDWTGLGPL 22
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,159,701
Number of Sequences: 28952
Number of extensions: 274466
Number of successful extensions: 793
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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