Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0567
(428 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 29 1.6
SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9) 28 2.9
SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 27 5.0
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 5.0
SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06) 27 6.6
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 27 8.7
>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 151 QNTGTCPESSCACPETSCACPETSCACPE-XSLCPE 255
+ T PE + A PE + PE + CPE S PE
Sbjct: 84 EGNSTSPEGNSASPEGNSTSPEGNSTCPEGNSTSPE 119
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 151 QNTGTCPESSCACPETSCACPETSCACPE-XSLCPE 255
+ T PE + CPE + PE + PE S PE
Sbjct: 98 EGNSTSPEGNSTCPEGNSTSPEGNSTSPEGNSTSPE 133
>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 139 TCVSQNTGTCPESSCACPETSCACPETSCACPE 237
T T P+++ A PE + A PE + A PE
Sbjct: 33 TAAPDATTAAPDATTAAPEATTAAPEATTAAPE 65
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 139 TCVSQNTGTCPESSCACPETSCACPETSCACPE 237
T T P+++ A P+ + A PE + A PE
Sbjct: 26 TAAPMETTAAPDATTAAPDATTAAPEATTAAPE 58
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 139 TCVSQNTGTCPESSCACPETSCACPETSCACP 234
T T PE++ A PE + A PE + A P
Sbjct: 40 TAAPDATTAAPEATTAAPEATTAAPEATTAAP 71
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 142 CVSQNTGTCPESSCACPETSCACPETSCACPEXSLCP 252
C+ N C + + C S CP+ S CP+ ++ P
Sbjct: 998 CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSNVEP 1033
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 148 SQNTGTCPESSCACPETSCACPETSCACPEXSL 246
S++ TC S CP+ S CP+++ E S+
Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNETSV 1038
>SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 139 TCVSQNTG-TC--PESSCACPETSCACPETSCACPEXSLC 249
TCV Q G TC P+SS CP+ A P +S C + C
Sbjct: 293 TCVDQVNGFTCLLPDSSETCPDNVGANPCSSNPCRNGATC 332
>SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9)
Length = 117
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 166 CPESSCACPETSCACPETSCACP 234
CP + ACP T CP T CP
Sbjct: 4 CPLTLLACPLTLFTCPLTPFTCP 26
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +1
Query: 163 TCPESSCACPETSCACPETSCACPEXSL-CP 252
TCP + CP T CP CP L CP
Sbjct: 17 TCPLTPFTCPLTPFTCPLPPFTCPLTLLTCP 47
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 166 CPESSCACPETSCACPETSCACP 234
CP + CP T CP T CP
Sbjct: 11 CPLTLFTCPLTPFTCPLTPFTCP 33
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 163 TCPESSCACPETSCACPETSCACP 234
TCP CP T CP +CP
Sbjct: 31 TCPLPPFTCPLTLLTCPLDMLSCP 54
>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 142 CVSQNTGTCPESSCACPETSCACPETSC 225
CVS P + ACP + AC SC
Sbjct: 80 CVSYRYDRVPYLTSACPNVTSACQRVSC 107
>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 124 CKLY*TCVSQNTGTCPESSCACPETSC 204
C L C SQ TC + +C C TSC
Sbjct: 183 CPLATPCASQFGITCRKLTCFCSRTSC 209
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 169 PESSCACPETSCACPETSCACP 234
P S CP+T CP S CP
Sbjct: 153 PFGSTVCPDTLTRCPAGSTCCP 174
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 221 LVSGQAQLVSGQAQLLSGQVPVFWLT 144
++ GQ Q+VSG AQ + G + W++
Sbjct: 1945 IIDGQRQVVSGHAQKIRGAQALVWVS 1970
>SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06)
Length = 218
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = +1
Query: 163 TCPESSCACPETSCACP---ETSCACPEXSLCPE 255
TC + C C+CP S + PE CPE
Sbjct: 172 TCSRGNGKCSFVGCSCPVGHHQSDSIPEGKCCPE 205
>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +1
Query: 142 CVSQNTGTCPESSCACPETSCA-CPETSC-ACPEXSLC 249
CV+ C C CP CA C S CP SLC
Sbjct: 227 CVTCRCSVCTCCPCDCPCLQCAPCIVFSALCCPFWSLC 264
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 172 ESSCACPETSCACPETSCACPEXSLC 249
E C+CP CP C P +LC
Sbjct: 214 EKHCSCPSNMFLCPSGEC-IPTTALC 238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,484,420
Number of Sequences: 59808
Number of extensions: 43539
Number of successful extensions: 335
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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