Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0566
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0112 - 17375871-17376099,17377021-17377054,17377237-173774...    27   5.8  
02_02_0357 + 9360108-9360754,9363732-9364137                           27   7.7  
02_02_0355 + 9312814-9313650                                           27   7.7  

>03_04_0112 -
           17375871-17376099,17377021-17377054,17377237-17377470,
           17377636-17377705
          Length = 188

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 109 SAGLDPEDPDFSGCFFGXSPAARG 38
           +A L   DP FSGC F  S +A G
Sbjct: 93  AATLSSSDPSFSGCTFPSSASAAG 116


>02_02_0357 + 9360108-9360754,9363732-9364137
          Length = 350

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -1

Query: 105 RVWTRRTRISRVASSVHRLQPGGSTSSRAXRHRGR 1
           R WT  TR  R AS    + PG     R  R R R
Sbjct: 124 RYWTPTTRPLRRASGEEEVMPGKEAMPRCRRRRRR 158


>02_02_0355 + 9312814-9313650
          Length = 278

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -1

Query: 105 RVWTRRTRISRVASSVHRLQPGGSTSSRAXRHRGR 1
           R WT  TR  R AS    + PG     R  R R R
Sbjct: 144 RYWTPTTRPLRRASGEEEVMPGKEAMPRCRRRRRR 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.116    0.300 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,537,250
Number of Sequences: 37544
Number of extensions: 71149
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)