Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0565
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   4.9  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   4.9  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   6.5  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   6.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.6  
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po...    25   8.6  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 7/37 (18%), Positives = 19/37 (51%)
 Frame = -2

Query: 359 KQMAADENKMADSSDSPTPHHATIYDQSYQTRELSVI 249
           + +A  +N + +    PTP H  ++++ ++   L  +
Sbjct: 416 RPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKV 452


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 256 DNSRVWYDW 282
           DNS VWYDW
Sbjct: 800 DNSTVWYDW 808


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 256 DNSRVWYDW 282
           DNS +WYDW
Sbjct: 822 DNSTIWYDW 830


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 182 HGVEFYEKEKVVGEEFYQQWPNILLTTLAFGTIGRIW 292
           HG+ + EKE +   E   +W N L T+L +    +I+
Sbjct: 445 HGLAWTEKEVLKNNEMPSKWINPLETSLPYAPDMKIY 481


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 208 EGCRRGVLSTMAQHITDNSRVWYDWSYMVAW 300
           EG R+G   T+ QH+++    W  W   + W
Sbjct: 722 EGIRQGKSKTILQHLSE---AWRCWKANIPW 749


>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 177 SAIAPADSRHVTSIS-IA-VAVMLPGLRFQQPTTPVQKAMNNVK 52
           S +  + S H+T++  IA V +  P ++ Q+P TP+    N +K
Sbjct: 61  SLVPQSPSEHLTTLEPIAKVTIRDPSMQVQRPYTPLYLDANELK 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,179
Number of Sequences: 5004
Number of extensions: 28511
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)