Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0565
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0004 - 133130-133897 33 0.23
10_06_0134 - 11090065-11091639 29 2.2
10_08_0210 - 15874289-15875663,15878248-15879263 29 2.9
11_06_0257 + 21746643-21748091 29 3.8
06_03_0218 + 18219956-18220555 28 5.0
11_05_0071 - 18821475-18821609,18821691-18822065,18822142-188226... 28 6.6
09_04_0446 - 17680408-17680721,17680812-17681108,17682740-17683490 27 8.7
05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147... 27 8.7
02_04_0205 + 20897376-20897597,20898623-20898774,20899874-209000... 27 8.7
>09_01_0004 - 133130-133897
Length = 255
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 163 RRQQTCDEHQYSGGGDVAGTALPAADDARP 74
RR++T D + +GGG+V T L A +DA P
Sbjct: 102 RRRRTGDAAEAAGGGEVVATPLDAGEDASP 131
>10_06_0134 - 11090065-11091639
Length = 524
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 401 YCILSASSRSRSPRKQMAADENKMADSSDSPTPHHATIYDQSYQT 267
YC L +SS + + +A + ++ S SP HH + D +Y +
Sbjct: 48 YCTLESSSANGAHPAHSSASSHSISPISGSPLSHHDSHSDHTYNS 92
>10_08_0210 - 15874289-15875663,15878248-15879263
Length = 796
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 38 FIVAFLTLFIAFWTGVVGCWKRSPGNITATAILMLVTCLLSAGAMALWHGVEFYEKEKVV 217
FIVA TL + G+ RS GN+T + L T + +L G+ + +
Sbjct: 18 FIVALTTLLMVIRFGLDALRHRSRGNVTQIVLATLDTVTHTMITYSL--GI---MQHRSA 72
Query: 218 GEEFYQQWPNILLTTLAFGT-IGR 286
+YQ W +LL TL + IGR
Sbjct: 73 TTSYYQLWA-VLLVTLRYSVKIGR 95
>11_06_0257 + 21746643-21748091
Length = 482
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 80 GVVGCWKRSPGNITATAILML-VTCLLSAGAM-ALWH 184
GV+ CW+ P ++ T L + LL +GA+ A WH
Sbjct: 9 GVIQCWETLPEDLLVTVFCQLEIPDLLRSGAVCASWH 45
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 157 QQTCDEHQYSGGGDVAGTALPAADDARP 74
++T DE Q +G G+V T L +DA P
Sbjct: 48 RRTGDEQQPAGDGEVVATPLDTGEDASP 75
>11_05_0071 -
18821475-18821609,18821691-18822065,18822142-18822674,
18822776-18823331,18824593-18824621,18824970-18825018
Length = 558
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = -2
Query: 404 RYCILSASSRSRSPRKQMAAD-----ENK-MADSSDSPTPHHATIYDQSYQTRELSVICW 243
RY L + +R P Q A+ EN+ + S ++ P H S+ + V+ W
Sbjct: 484 RYIDLGVETTNRVPTTQDASQVTQCLENEDLVASREASAPLHPGERTSSHSESSIQVVDW 543
Query: 242 AIVDRTPLLQ 213
+RTP+ +
Sbjct: 544 TSTERTPMFK 553
>09_04_0446 - 17680408-17680721,17680812-17681108,17682740-17683490
Length = 453
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 187 PVPQCHSARRQQTCDEHQ-YSGGGDVAGTALPAADDARPES 68
P P+ ++ + D+ GGG V TA PA+ A PES
Sbjct: 37 PKPRPEKKKKDPSSDDASGRGGGGGVVQTAPPASGRAAPES 77
>05_06_0096 +
25513535-25514024,25514139-25514236,25514395-25514783,
25515485-25515599,25515816-25515917,25516584-25516734,
25517162-25517250,25517518-25517566,25517723-25517763,
25517929-25518116,25518285-25518402,25518900-25519079,
25519172-25519294,25519368-25519455,25519549-25519679,
25519768-25519866,25520822-25521253
Length = 960
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 389 SASSRSRSPRKQMAADENKMADSSDSPTP--HH 297
S +S+SR+P+ Q A + + + SS TP HH
Sbjct: 860 SRNSQSRTPKAQAAPERSSSSSSSSQGTPNSHH 892
>02_04_0205 +
20897376-20897597,20898623-20898774,20899874-20900084,
20900734-20900872,20901310-20901341,20901471-20901557,
20901720-20901932,20903687-20903869,20903979-20904084,
20905042-20905064,20905511-20905570
Length = 475
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 205 FFIKLNPVPQCHSARRQQTCDEHQYSGGGDVAGTALPAADDARPES 68
F ++ + P+ S RR ++ GGG+ A A DD ES
Sbjct: 359 FLLQDSTSPEGESVRRMWRKGNKRFGGGGEPAAKRRAAGDDGPSES 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,846,463
Number of Sequences: 37544
Number of extensions: 240278
Number of successful extensions: 922
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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