Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0565
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.96 
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)        29   2.9  
SB_1877| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          28   5.1  
SB_2378| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_43732| Best HMM Match : Rop (HMM E-Value=6.5)                       27   8.9  
SB_25786| Best HMM Match : Rop (HMM E-Value=6.5)                       27   8.9  
SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2)                     27   8.9  

>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 380 SRSRSPRKQMAADENKMADSSDSPTPHH 297
           SRSRSPR++  +   +    S SP+PHH
Sbjct: 226 SRSRSPRRRRRSRSPRRRRRSRSPSPHH 253


>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
          Length = 650

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 55  DVVHCFLDGRRRLLEAQSRQHHRHRYT 135
           D++HC LDG    L+  +  HH HR++
Sbjct: 148 DLLHCNLDGHEEFLDFVTNTHH-HRFS 173


>SB_1877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = -2

Query: 332 MADSSDSPTPHHATIYDQSYQTRELSVICWAIVD---RTPLLQPSL 204
           MADSSDS  P H   Y Q  + + L   C   +     TP+  P L
Sbjct: 1   MADSSDSKQPSHIPAYGQKDRKKSLPFPCHVRLKFKLNTPVNSPQL 46


>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1250

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/61 (21%), Positives = 27/61 (44%)
 Frame = +1

Query: 127  RYTDARHMSAVGGRYGTVARG*VL*KREGCRRGVLSTMAQHITDNSRVWYDWSYMVAWCG 306
            R  +A + S V   +     G V  +    ++G +    +H  ++S+VW+     + W G
Sbjct: 860  RRLEAINRSPVFSHFSDTLEGLVTVRTHHMQKGFIKAFYKHQDEHSKVWFTLLSALRWLG 919

Query: 307  V 309
            +
Sbjct: 920  I 920


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 395 CSTSCRYTHKSSSTLTPDTRRPRGN-PGPY--YHG 490
           C+  C Y +++S T T D   PR + PGP   YHG
Sbjct: 42  CNGRCIYWYRNSKTPTLDDFLPRNSLPGPVTSYHG 76


>SB_2378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 137 MLVTCLLSAGAMALWHGVEFYEK 205
           ++ +C   +GA+A WHG+ F  K
Sbjct: 15  VVTSCFQESGAIAQWHGLRFSNK 37


>SB_43732| Best HMM Match : Rop (HMM E-Value=6.5)
          Length = 294

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 40  HCGVLDVVHCFLDGRRRLLEAQSRQHHRHRYTDARHMSAV 159
           +CG +  VH  +D  RR+L A +  H     T  R++SA+
Sbjct: 139 NCGRIRTVHSNIDTTRRILNATTPPHILATETADRNISAL 178


>SB_25786| Best HMM Match : Rop (HMM E-Value=6.5)
          Length = 294

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 40  HCGVLDVVHCFLDGRRRLLEAQSRQHHRHRYTDARHMSAV 159
           +CG +  VH  +D  RR+L A +  H     T  R++SA+
Sbjct: 139 NCGRIRTVHSNIDTTRRILNATTPPHILATETADRNISAL 178


>SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2)
          Length = 278

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 190 NPVPQCHSARRQQTCDEHQYSGGGDVAGTALPAADDARPE 71
           NP  +  SAR+ Q  +  QYS G    GT +      RP+
Sbjct: 166 NPHAKPESARQNQPIECIQYSSGAKPNGTGMSGISGPRPK 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,929,548
Number of Sequences: 59808
Number of extensions: 245379
Number of successful extensions: 768
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)