Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0565
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical pr...    65   3e-11
U97552-5|AAQ01520.1|  605|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U97552-4|AAX55684.1|  666|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U97552-3|AAQ01521.1|  663|Caenorhabditis elegans Hypothetical pr...    29   1.9  

>U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical
           protein F53B3.5 protein.
          Length = 339

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 29/86 (33%), Positives = 51/86 (59%)
 Frame = +2

Query: 5   RLHMARSTVALFIVAFLTLFIAFWTGVVGCWKRSPGNITATAILMLVTCLLSAGAMALWH 184
           R + A++T+  ++V  + + ++F  G++GCW RS   I +T IL+++  L  + AM LWH
Sbjct: 134 RHYAAKATIIAYVVGIVFVVLSFIVGLIGCWNRSKKFIMSTGILLILAGLSMSVAMLLWH 193

Query: 185 GVEFYEKEKVVGEEFYQQWPNILLTT 262
            V + E+  +  E +Y+ W  IL  T
Sbjct: 194 YVAYSERYTLDVEPYYKSWEPILKLT 219



 Score = 31.5 bits (68), Expect = 0.48
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 262 SRVWYDWSYMVAWCGVGXXXXXXXXXXXXXXCLRGEREREEALNMQ---YLMP 411
           SR  Y WSY+V+W G+G               ++  RE E+AL  +   Y+MP
Sbjct: 220 SRHNYGWSYIVSWIGIGFIVIGSAFMFFAYAAVK--REEEDALTAKHGAYMMP 270


>U97552-5|AAQ01520.1|  605|Caenorhabditis elegans Hypothetical
           protein W05H7.4a protein.
          Length = 605

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 383 SSRSRSPRKQMAADENKMADSSDSPTPHHATIYDQS 276
           S R  +PR+ M A + +   +  +PTPH   ++ ++
Sbjct: 246 SQRPENPRRPMYAQQQQQQSAHQTPTPHIQQVFQET 281


>U97552-4|AAX55684.1|  666|Caenorhabditis elegans Hypothetical
           protein W05H7.4e protein.
          Length = 666

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 383 SSRSRSPRKQMAADENKMADSSDSPTPHHATIYDQS 276
           S R  +PR+ M A + +   +  +PTPH   ++ ++
Sbjct: 307 SQRPENPRRPMYAQQQQQQSAHQTPTPHIQQVFQET 342


>U97552-3|AAQ01521.1|  663|Caenorhabditis elegans Hypothetical
           protein W05H7.4b protein.
          Length = 663

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 383 SSRSRSPRKQMAADENKMADSSDSPTPHHATIYDQS 276
           S R  +PR+ M A + +   +  +PTPH   ++ ++
Sbjct: 304 SQRPENPRRPMYAQQQQQQSAHQTPTPHIQQVFQET 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,944,307
Number of Sequences: 27780
Number of extensions: 175345
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)