Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0565
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03720.1 68416.m00377 amino acid permease family protein simi...    29   1.8  
At4g28580.1 68417.m04088 magnesium transporter CorA-like family ...    29   2.4  
At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar ...    27   7.3  

>At3g03720.1 68416.m00377 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 600

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 392 LSASSRSRSPRKQMAAD-ENKMAD---SSDSPTPHHATIYDQSYQTRELSVICWAI 237
           LS+SS++ S   +  A+ EN + D   SSDSP   + T  D+ Y  +   +  W+I
Sbjct: 413 LSSSSQTLSDTDESRAETENFLVDAIESSDSPLLGNETARDEKYFGKRRKIAAWSI 468


>At4g28580.1 68417.m04088 magnesium transporter CorA-like family
           protein (MRS2-6) weak similarity to SP|Q01926 RNA
           splicing protein MRS2, mitochondrial precursor
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01544: CorA-like Mg2+ transporter protein
          Length = 408

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 392 LSASSRSRSPRKQMAADENKMADSSDSPTPHHATIYDQSYQT--RELSVICWAIVDRTPL 219
           L  S+ +RS +K  A   N+M  S   PTP  + I   + ++  R   V  W   DRT  
Sbjct: 4   LRRSTSNRSRKKGTAVKMNRMPSSLSPPTPPCSAIVGGTGKSKKRRGGVCLWTRFDRTGF 63

Query: 218 LQ 213
           ++
Sbjct: 64  ME 65


>At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar to
           SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
           Transmembrane trafficking protein) {Homo sapiens};
           contains Pfam profile PF01105: emp24/gp25L/p24 family
          Length = 170

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 140 LVTCLLSAGAMALWHGVEFYEKEKVV 217
           LV CL  AG +  WH   F+EK+K++
Sbjct: 146 LVVCLSVAG-LQFWHLKTFFEKKKLI 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,490,695
Number of Sequences: 28952
Number of extensions: 163806
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)