Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0562
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   100   2e-22
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   100   2e-22
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   4.9  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   4.9  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  100 bits (239), Expect = 2e-22
 Identities = 47/84 (55%), Positives = 52/84 (61%)
 Frame = +3

Query: 255 GGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXTXVXXLVQAXG 434
           GGTHRSGQ AFGNMCR GRMFAPTK WR+WH                  + V  L+ A G
Sbjct: 82  GGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARG 141

Query: 435 HIIEKIPELPLVVADKVQEINKTK 506
           H IE+IPE+PLVV D VQ   KTK
Sbjct: 142 HRIEEIPEVPLVVDDAVQSFQKTK 165



 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 43/70 (61%), Positives = 53/70 (75%)
 Frame = +1

Query: 10  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPXLVNDVHVSMSKNSRQPYCVSKEAG 189
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRP LV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 190 HQTSAESWGT 219
           HQTSAESWGT
Sbjct: 60  HQTSAESWGT 69



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +2

Query: 494 QQDQIAVIFLRRLKAWSDILKVYKSQXLRAXKGKMRN 604
           Q+ + AV  L+ +KA+ D++KV  S+ LRA KGK+RN
Sbjct: 162 QKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRN 198


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  100 bits (239), Expect = 2e-22
 Identities = 47/84 (55%), Positives = 52/84 (61%)
 Frame = +3

Query: 255 GGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXTXVXXLVQAXG 434
           GGTHRSGQ AFGNMCR GRMFAPTK WR+WH                  + V  L+ A G
Sbjct: 82  GGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARG 141

Query: 435 HIIEKIPELPLVVADKVQEINKTK 506
           H IE+IPE+PLVV D VQ   KTK
Sbjct: 142 HRIEEIPEVPLVVDDAVQSFQKTK 165



 Score = 94.7 bits (225), Expect = 9e-21
 Identities = 44/70 (62%), Positives = 53/70 (75%)
 Frame = +1

Query: 10  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPXLVNDVHVSMSKNSRQPYCVSKEAG 189
           ++ ARP VS+YS K  +V      LPFVFKAPIRP LV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 190 HQTSAESWGT 219
           HQTSAESWGT
Sbjct: 60  HQTSAESWGT 69



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +2

Query: 494 QQDQIAVIFLRRLKAWSDILKVYKSQXLRAXKGKMRN 604
           Q+ + AV  L+ +KA+ D++KV  S+ LRA KGK+RN
Sbjct: 162 QKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRN 198


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 9   SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 119
           SI SP+ SVG   +  D +  S + P+ I G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 84  PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 179
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,148
Number of Sequences: 5004
Number of extensions: 34633
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)