Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0562
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 106 1e-23
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 106 1e-23
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 31 0.54
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 31 0.94
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 30 1.6
08_02_1278 - 25838146-25839411 29 3.8
10_07_0029 + 12031711-12032464,12044289-12044386 28 5.0
07_01_0469 - 3552409-3553368 28 6.6
04_01_0244 - 3194141-3195091,3195301-3195312 28 6.6
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 27 8.7
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 8.7
03_01_0147 - 1170481-1171260,1171332-1171511 27 8.7
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 106 bits (255), Expect = 1e-23
Identities = 48/85 (56%), Positives = 54/85 (63%)
Frame = +3
Query: 249 PWGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXTXVXXLVQA 428
P GGTHR+GQGAFGNMCRGGRMFAPTK WR+WH T V LV A
Sbjct: 84 PGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLA 143
Query: 429 XGHIIEKIPELPLVVADKVQEINKT 503
GH IE +PELPLV++D + I KT
Sbjct: 144 RGHRIETVPELPLVISDSAESIEKT 168
Score = 72.5 bits (170), Expect = 2e-13
Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Frame = +1
Query: 22 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPXLVNDVHVSMSKNSRQPYCVSKEAGHQ 195
RPLVSV + + + T ++ L VF+AP+RP +V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 196 TSAESWGT 219
TSAESWGT
Sbjct: 66 TSAESWGT 73
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 509 AVIFLRRLKAWSDILKVYKSQXLRAXKGKMRN 604
A+ L+++ A++D K S +R KGKMRN
Sbjct: 171 AIKILKQVGAYADAEKAKDSVGIRPGKGKMRN 202
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 106 bits (255), Expect = 1e-23
Identities = 49/85 (57%), Positives = 54/85 (63%)
Frame = +3
Query: 249 PWGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXTXVXXLVQA 428
P GGTHR+GQGAFGNMCRGGRMFAPTK WRRWH T V LV A
Sbjct: 83 PGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLA 142
Query: 429 XGHIIEKIPELPLVVADKVQEINKT 503
GH IE +PE PLVV+D ++ I KT
Sbjct: 143 RGHRIEGVPEFPLVVSDSIESIEKT 167
Score = 74.5 bits (175), Expect = 6e-14
Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Frame = +1
Query: 13 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPXLVNDVHVSMSKNSRQPYCVSKEAG 189
+ ARPLVSV + E A +P V +APIRP +V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 190 HQTSAESWGT 219
HQTSAESWGT
Sbjct: 63 HQTSAESWGT 72
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 521 LRRLKAWSDILKVYKSQXLRAXKGKMRN 604
L+++ A++D K S +RA KGKMRN
Sbjct: 174 LKQIGAYADAEKTKDSVAIRAGKGKMRN 201
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 307 PPRHMLPKAP*PDLWVPPHGXAEXGQQHVRY 215
PPRH++P+ P P WVPP ++ H Y
Sbjct: 308 PPRHLVPRGPAPP-WVPPPPPSDPAFWHHPY 337
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.7 bits (66), Expect = 0.94
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 3 NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 140
N + P+F V G SQA V + GAHT G Q C F
Sbjct: 131 NSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 3 NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 140
N I +PTF +G + G S + + GAHT G + C F
Sbjct: 132 NNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_1278 - 25838146-25839411
Length = 421
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 512 QLFGLVDLLDFVGYNQGKLGNLFNNVSXSL 423
+LF L+D+LD V +G+L LF+ S +L
Sbjct: 95 RLFRLLDMLDAVARERGRLDELFSGESATL 124
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 312 YVHHDTCYRRHPDRTYG 262
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRYHPRRANG 110
>07_01_0469 - 3552409-3553368
Length = 319
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 312 YVHHDTCYRRHPDRTYG 262
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRFHPRRASG 110
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 312 YVHHDTCYRRHPDRTYG 262
Y+ HDT YR HP R G
Sbjct: 98 YIFHDTAYRFHPRRANG 114
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 3 NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 140
N I +PT +G + G S + + GAHT G + C F
Sbjct: 132 NNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 94 IRTGGAWLHPAPSHSSLN-TPTLKVGLPIDSF 2
+R+ WL P P+H ++N L + +P+D F
Sbjct: 865 LRSYITWLKPTPAHVAMNPAEALAMQIPVDHF 896
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 6 ESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 140
++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 149 DNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,229,805
Number of Sequences: 37544
Number of extensions: 297281
Number of successful extensions: 867
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -