Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0562
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               102   3e-22
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)               27   8.9  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           27   8.9  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  102 bits (244), Expect = 3e-22
 Identities = 44/83 (53%), Positives = 54/83 (65%)
 Frame = +3

Query: 255 GGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXTXVXXLVQAXG 434
           GGTHRSGQGAFGNMCRGGRMFAPTK WR+WH                  + +  L+ A G
Sbjct: 79  GGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARG 138

Query: 435 HIIEKIPELPLVVADKVQEINKT 503
           H IEKI E+PLV++D ++ + KT
Sbjct: 139 HRIEKIAEVPLVISDAIESVTKT 161



 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 41/67 (61%), Positives = 51/67 (76%)
 Frame = +1

Query: 19  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPXLVNDVHVSMSKNSRQPYCVSKEAGHQT 198
           ARP+++V++E  E+       LP VFKAPIRP LVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 199 SAESWGT 219
           SAESWGT
Sbjct: 60  SAESWGT 66



 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 509 AVIFLRRLKAWSDILKVYKSQXLRAXKGKMRN 604
           AV  L+ + A+ D+ K   S+ +RA KGKMRN
Sbjct: 164 AVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRN 195


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 86   GRGLAAPCTVSLFSEYTDTKGRATDRLI 3
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
          Length = 2261

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 313  IRPPRHMLPKAP*PDLWVPPHGXAEXGQQ 227
            + PP   +P+AP     VPP G    GQQ
Sbjct: 1099 VAPPEEPVPEAPSVQPSVPPEGEPTDGQQ 1127


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 577 KXLRLVHLKDIRPCLEAPQEDDSYLVLLISWTLSATT 467
           K ++    + +  C+  PQE  +Y  LLI  T+  TT
Sbjct: 422 KHMQKAQCEGLNQCINEPQETRTYSTLLIMTTMIMTT 458


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,523,647
Number of Sequences: 59808
Number of extensions: 297317
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)