Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0562
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    99   1e-21
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    28   5.9  
AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like ...    27   7.9  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =   99 bits (238), Expect = 1e-21
 Identities = 44/84 (52%), Positives = 55/84 (65%)
 Frame = +3

Query: 255 GGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXTXVXXLVQAXG 434
           GGTHRSGQGAFGNMCRGG MFAP K +RRWH                  + +  L+QA G
Sbjct: 81  GGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARG 140

Query: 435 HIIEKIPELPLVVADKVQEINKTK 506
           H+I+++ E+PLVV+DKV+   KTK
Sbjct: 141 HVIDQVAEVPLVVSDKVESFRKTK 164



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 35/67 (52%), Positives = 45/67 (67%)
 Frame = +1

Query: 19  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPXLVNDVHVSMSKNSRQPYCVSKEAGHQT 198
           ARPLV+VY EK E  Q   + LP VF+ PIRP LV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 199 SAESWGT 219
           SAESWGT
Sbjct: 62  SAESWGT 68



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +2

Query: 509 AVIFLRRLKAWSDILKVYKSQXLRAXKGKMRN 604
           AV+FLRR   W+DI KVY S+  RA KGK+RN
Sbjct: 166 AVVFLRRSHLWADIEKVYNSKRNRAGKGKLRN 197


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +1

Query: 4   MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPXLVNDVHVSMSKNSRQPYCVS 177
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


>AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like
           (grd related) protein31 protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +3

Query: 222 TCCCPXSAXPWGGTHRSGQGAFGNMCRGGRMFAPTKP 332
           T  CP     +GG    G G  G  C GG   AP  P
Sbjct: 15  TTACPGLLNIFGGAGGGGCGGCGGGCGGGCGCAPPPP 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,814,556
Number of Sequences: 27780
Number of extensions: 214318
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)