Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0560
         (576 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.5  
AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4 p...    22   4.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.5  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 237 LSVAYKMS*VPDGHHGVSFP 296
           +S+A KM   P GH G + P
Sbjct: 106 VSMASKMGLAPTGHPGAALP 125


>AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4
           protein.
          Length = 23

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 173 GGRDEGSDGNRRR 211
           GGR E S G RRR
Sbjct: 9   GGRPETSSGRRRR 21


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 326 RKQQMAKEYRVKVEKELREICYDVLGLLDKHLIP 427
           R++Q   + +V+ E ++ +   DV+ ++DK L P
Sbjct: 350 RQEQETLKSQVQRESDVVDSLKDVIEIVDKLLNP 383


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 52  SPSDKGISELVLFHRPRCPSTRKNWCN 132
           +PS++ + EL    R  C     +W N
Sbjct: 295 NPSERVMRELGRIFRAYCRENHASWVN 321


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,409
Number of Sequences: 336
Number of extensions: 2369
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)