Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0560
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   114   1e-26
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   111   5e-26
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    27   2.6  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   3.4  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    26   4.5  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   6.0  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   6.0  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   7.9  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    25   7.9  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   7.9  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  114 bits (274), Expect = 1e-26
 Identities = 53/84 (63%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
 Frame = +2

Query: 254 DVVGARRSSWXVIS*IEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIP 427
           +++GARR+SW +IS IEQK E  G+ R+  + KEYR K+E EL +IC+DVL +L+KHLIP
Sbjct: 52  NIIGARRASWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIP 111

Query: 428 KASNPESKVFYLKMKGDYYRYLAE 499
            A+  ESKVFY KMKGDYYRYLAE
Sbjct: 112 AATTGESKVFYYKMKGDYYRYLAE 135



 Score = 58.0 bits (134), Expect = 9e-10
 Identities = 31/51 (60%), Positives = 37/51 (72%)
 Frame = +3

Query: 102 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYK 254
           MS  +E  V  AKLAEQAERY++M   MK+V  +  +LS EERNLLSVAYK
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYK 51


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  111 bits (268), Expect = 5e-26
 Identities = 52/86 (60%), Positives = 68/86 (79%), Gaps = 2/86 (2%)
 Frame = +2

Query: 254 DVVGARRSSWXVIS*IEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIP 427
           +V+GARR+SW ++S IEQK E  G+  + ++ KEYR K+E+EL  IC D+L +L+KHLIP
Sbjct: 53  NVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIP 112

Query: 428 KASNPESKVFYLKMKGDYYRYLAEVA 505
            A++ ESKVFY KMKGDYYRYLAE A
Sbjct: 113 NAASAESKVFYYKMKGDYYRYLAEFA 138



 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 30/50 (60%), Positives = 35/50 (70%)
 Frame = +3

Query: 105 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYK 254
           +  +E+ V  AKLAEQAERY+ M   MK V  T  EL+ EERNLLSVAYK
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYK 52


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +2

Query: 302 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 478
           E      E+ Q++A+ Y+V  + +LRE  YD LG +    +P A   ++  F+  +  GD
Sbjct: 43  ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99

Query: 479 YYR-YLAEV 502
            +R Y+ E+
Sbjct: 100 SFRDYVGEL 108


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 305 QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 430
           +K    +    + KEY  K +++LR+   D+  LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 7   EKLILCLNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNW 144
           EKL+ C       HF    +G+ +  L    RC +T    CNVP W
Sbjct: 683 EKLVACTT-----HFY---EGVRKSALSSLWRCATTYYKVCNVPQW 720


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 49  FSPSDK-GISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 171
           FSP +K  + +L LFH  + PS+++    V N  +  SD +T
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSN--SNSSDTST 201


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 323 ERKQQMAKEYRVKVEKELREICYDV--LGLLDKHLIPKASNPE 445
           E++Q  A +YR+KVE+   +I   V  +  L+  L  + SNPE
Sbjct: 85  EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 395 VLGLLDKHLIPKASN-PESKVFYLKMKGD--YYRYLAEVATEXPDIL 526
           VL  L+  L+  A+  PE K+FY K  GD  Y +YL    ++  +IL
Sbjct: 509 VLMQLESFLLNIANPAPEGKLFYEKQTGDNPYLKYLLLDPSKHVEIL 555


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +1

Query: 4   REKLILC-----LNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLSDM 165
           +E  ILC     L+L+V  +    ++  S+ + F +PR     K   N   WPN+ S +
Sbjct: 42  KENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETSHL 100


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 314 EGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLK-MKGDYYRY 490
           EGS  K ++A  Y+ + +  L+ I   +L   D H+       E ++ YLK ++  +   
Sbjct: 42  EGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHM-----RVEREISYLKLLRHPHIIK 96

Query: 491 LAEVATEXPDILL 529
           L +V T   DI++
Sbjct: 97  LYDVITTPTDIVM 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,103
Number of Sequences: 5004
Number of extensions: 42670
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)