Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0559
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...    57   2e-09
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    29   0.56 
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   1.7  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.0  

>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +3

Query: 519 FSVDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPG 629
           FS+DQLMELAGLSV+ A+ + +PPS +S  LI CGPG
Sbjct: 24  FSIDQLMELAGLSVSQAVYREYPPSQYSQVLICCGPG 60


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 203 LRRFFYCFSFTN-NRYVVWFQMSVKIIFYLNPMCML 99
           +R   + FSF N N Y+VWF+  +     L P C++
Sbjct: 56  VRECLFLFSFQNDNEYLVWFKKHLNERLQLCPKCIV 91


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 490 VLPLLTD*GTASQCCIDSYCSS*FRCYT 407
           VLP LT+ G  S  C    C S ++CY+
Sbjct: 394 VLPFLTNGGCYSYICRSRSCPSKYQCYS 421


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 105 HVTYIGRYHRLYT*WY 58
           H TYIGR+H+ +  W+
Sbjct: 430 HNTYIGRWHKFFQGWF 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,541
Number of Sequences: 5004
Number of extensions: 49928
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)