Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0559
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-3|CAA22319.1|  348|Caenorhabditis elegans Hypothetical ...    45   4e-05
U21324-8|AAA62561.1|  190|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z81074-10|CAB03036.1|  278|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z66519-7|CAA91378.2|  338|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AL034393-3|CAA22319.1|  348|Caenorhabditis elegans Hypothetical
           protein Y18D10A.3 protein.
          Length = 348

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 22/42 (52%), Positives = 29/42 (69%)
 Frame = +3

Query: 504 FHEYKFSVDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPG 629
           F +Y F V+QLMELAGL+ A AIA  +P    S+  ++CGPG
Sbjct: 139 FTKYGFKVEQLMELAGLAAAQAIAAHYP---KSNVAVLCGPG 177


>U21324-8|AAA62561.1|  190|Caenorhabditis elegans Hypothetical
           protein C35D10.5 protein.
          Length = 190

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 332 HDDLLYGSRIFKCLYKLQEVHINELIQYLTYY*ST 228
           HDD +    I++CLY  +EV    L++ +TY  ST
Sbjct: 129 HDDRVLAGAIWRCLYMNREVDPIHLLKVVTYMRST 163


>Z81074-10|CAB03036.1|  278|Caenorhabditis elegans Hypothetical
           protein F32B6.5 protein.
          Length = 278

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 507 HEYKFSVDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPGKL 635
           H++  S D+ +     SV+S I+     S  SS  I+ GPG L
Sbjct: 196 HKFDISEDESLPCTAQSVSSPISPSSTTSDSSSETIILGPGHL 238


>Z66519-7|CAA91378.2|  338|Caenorhabditis elegans Hypothetical
           protein B0334.7 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = -2

Query: 437 ILLVIVPMLYSFAT---RNY-QMFN*CYILCSKLH 345
           ++++++PM+Y F +   + Y QMFN   I+C  LH
Sbjct: 254 VVVIVLPMIYCFYSIVWQQYNQMFNNIAIMCISLH 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,816,556
Number of Sequences: 27780
Number of extensions: 285833
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)