Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0559
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.6  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 379 LINVTYCALS---YIDNLGMMTYFTDHVYLNVYINYKRYIL 266
           ++N  Y + +   Y D    + YF + V LN Y  Y R +L
Sbjct: 201 IVNTNYSSKNMREYNDPEYKLDYFMEDVELNAYYYYMREML 241


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -3

Query: 379 LINVTYCAL---SYIDNLGMMTYFTDHVYLNVYINYKRYIL 266
           ++N  Y +     Y D    + YF + V LN Y  Y R +L
Sbjct: 201 IVNTNYSSKYMREYNDPEYKLDYFMEDVELNAYYYYMREML 241


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 286 LYKHLNIRDP*SKSSCQDYQCNLEH 360
           LY H   + P  +  C+DYQ  L+H
Sbjct: 277 LYGHGVCKWPGCEVICEDYQAFLKH 301


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 298 LNIRDP*SKSSCQDYQCNLEHNM 366
           L+IRD   +   + YQC  +H +
Sbjct: 165 LHIRDVGPEDGYKTYQCRTKHRL 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,938
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)