Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0559
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49970.2 68418.m06187 pyridoxamine 5'-phosphate oxidase-relat...    56   1e-08
At5g49970.1 68418.m06188 pyridoxamine 5'-phosphate oxidase-relat...    56   1e-08
At5g59590.1 68418.m07467 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.4  
At3g28345.1 68416.m03541 ABC transporter family protein similar ...    27   7.9  

>At5g49970.2 68418.m06187 pyridoxamine 5'-phosphate oxidase-related
           contains weak similarity to Pyridoxamine 5'-phosphate
           oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx).
           (Swiss-Prot:P28225) [Shigella flexneri]
          Length = 466

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = +3

Query: 519 FSVDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPG 629
           FS+DQLMELAGLSVA++IA+V+ P  +S  L +CGPG
Sbjct: 94  FSIDQLMELAGLSVAASIAEVYKPEEYSRVLAICGPG 130


>At5g49970.1 68418.m06188 pyridoxamine 5'-phosphate oxidase-related
           contains weak similarity to Pyridoxamine 5'-phosphate
           oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx).
           (Swiss-Prot:P28225) [Shigella flexneri]
          Length = 530

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = +3

Query: 519 FSVDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPG 629
           FS+DQLMELAGLSVA++IA+V+ P  +S  L +CGPG
Sbjct: 94  FSIDQLMELAGLSVAASIAEVYKPEEYSRVLAICGPG 130


>At5g59590.1 68418.m07467 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 449

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 33  RIIHNNTYHTIKCIIYDTYLYR*HA 107
           +++H    + I C++YD Y+Y  HA
Sbjct: 98  QLLHEQCNNDIACVVYDEYMYFSHA 122


>At3g28345.1 68416.m03541 ABC transporter family protein similar to
           P-glycoprotein [Arabidopsis thaliana] GI:3849833;
           contains Pfam profiles PF00005: ABC transporter,
           PF00664: ABC transporter transmembrane region
          Length = 1240

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +3

Query: 324 VIMPRLSM*LRAQYVTLIK--HLVVACSKTV*HRNYDEQYESMQHCDAVPQSVRSGSTGP 497
           +I  RLS    A  ++++K  H+V   S      N D QY ++ H   + +   + S   
Sbjct: 551 LIAHRLSTIRNADVISVVKNGHIVETGSHDELMENIDGQYSTLVHLQQIEKQDINVSVKI 610

Query: 498 GSFHEYKFSVDQLMELAGLSVASAIAKVFPPST 596
           G   +    +     ++ LS +S+   V  PST
Sbjct: 611 GPISDPSKDIRNSSRVSTLSRSSSANSVTGPST 643


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,455,567
Number of Sequences: 28952
Number of extensions: 239255
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)