Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0558
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63820.1 68418.m08010 expressed protein contains Pfam profile...    28   3.5  
At2g22475.2 68415.m02665 GRAM domain-containing protein / ABA-re...    28   4.6  
At2g22475.1 68415.m02666 GRAM domain-containing protein / ABA-re...    27   8.0  
At2g12940.1 68415.m01419 expressed protein                             27   8.0  
At1g52160.1 68414.m05887 metallo-beta-lactamase family protein         27   8.0  
At1g28200.1 68414.m03461 GRAM domain-containing protein / ABA-re...    27   8.0  

>At5g63820.1 68418.m08010 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 225

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 369 IYKNIFIYSYLYRAVTNSGFVLWQSTNRGYNSIGINSYL 253
           +Y  + +Y Y ++  TN  FV W+  N    +  I++Y+
Sbjct: 48  LYAKLGLYCYNFQKGTNLKFVRWEKYNTSTGTAYIDNYI 86


>At2g22475.2 68415.m02665 GRAM domain-containing protein /
           ABA-responsive protein-related similar to ABA-responsive
           protein [Hordeum vulgare] GI:4103635; contains Pfam
           profile PF02893: GRAM domain
          Length = 248

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 88  CSETPIRLKPGERSIXNYFKIIDPSYF 168
           CS+ P+  K G+++  +Y+K++ P+ F
Sbjct: 218 CSDNPLSYKNGDQTEWSYYKVMCPTPF 244


>At2g22475.1 68415.m02666 GRAM domain-containing protein /
           ABA-responsive protein-related similar to ABA-responsive
           protein [Hordeum vulgare] GI:4103635; contains Pfam
           profile PF02893: GRAM domain
          Length = 299

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 88  CSETPIRLKPGERSIXNYFKIIDP 159
           CS+ P+  K G+++  +Y+K++ P
Sbjct: 218 CSDNPLSYKNGDQTEWSYYKVVIP 241


>At2g12940.1 68415.m01419 expressed protein
          Length = 294

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 405 GKFVKIRYRVC*IYKNIFIYSYLYRAVTNSGFVLWQSTNRGYN 277
           GK  K+R   C + +N   +      V +S  + W   N G+N
Sbjct: 251 GKVQKLRMATCEVLQNRHEFDKSNMEVMDSNMINWSQPNPGFN 293


>At1g52160.1 68414.m05887 metallo-beta-lactamase family protein
          Length = 890

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 270 GINSYLPDHKIKLNYITYVQLAKT---NGGWITRLLLEVRGVDD 148
           G+  +  +HKIKL+ I +V L++      G +  LLL + G+ +
Sbjct: 136 GLQRFCTEHKIKLSKIDHVFLSRVCSETAGGLPGLLLTLAGIGE 179


>At1g28200.1 68414.m03461 GRAM domain-containing protein /
           ABA-responsive protein-related similar to ABA-responsive
           protein [Hordeum vulgare] GI:4103635; contains Pfam
           profile PF02893: GRAM domain
          Length = 259

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +1

Query: 91  SETPIRLKPGERSIXNYFKIIDPS 162
           S+ P+  K GE+++ +Y+K++ P+
Sbjct: 182 SDNPLSYKEGEQTLWSYYKVVLPA 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,426,505
Number of Sequences: 28952
Number of extensions: 189733
Number of successful extensions: 407
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)