Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0557
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 163 2e-41
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 163 3e-41
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 163 3e-41
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 97 2e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 91 2e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 74 2e-14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.002
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.007
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.007
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.015
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.026
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.19
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.25
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.43
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.57
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo... 27 1.7
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.0
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 26 4.0
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 26 5.3
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 25 7.0
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 7.0
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 7.0
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.0
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 7.0
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 25 9.2
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 9.2
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 9.2
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 9.2
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 9.2
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 163 bits (396), Expect = 2e-41
Identities = 82/127 (64%), Positives = 94/127 (74%)
Frame = +1
Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
IALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTR
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTR 134
Query: 436 EHALLAFTLGVKQLIVGVNKMDSTDHHTVSPDLRKSRREYPHTSRRLATTQLLSLSCPFS 615
EHALLA+TLGVKQLIV VNKMD+T + +E + +++ P S
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFVPVS 192
Query: 616 GWHGDNM 636
G+ GDNM
Sbjct: 193 GFQGDNM 199
Score = 141 bits (341), Expect = 9e-35
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 216 DKLKAERE 239
DKLKAERE
Sbjct: 61 DKLKAERE 68
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 163 bits (395), Expect = 3e-41
Identities = 81/127 (63%), Positives = 94/127 (74%)
Frame = +1
Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
IALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTR
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTR 134
Query: 436 EHALLAFTLGVKQLIVGVNKMDSTDHHTVSPDLRKSRREYPHTSRRLATTQLLSLSCPFS 615
EHALLA+TLGVKQLIV VNKMD+T + +E + +++ P S
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFVPVS 192
Query: 616 GWHGDNM 636
G+ GDNM
Sbjct: 193 GFQGDNM 199
Score = 141 bits (341), Expect = 9e-35
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 216 DKLKAERE 239
DKLKAERE
Sbjct: 61 DKLKAERE 68
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 163 bits (395), Expect = 3e-41
Identities = 81/127 (63%), Positives = 94/127 (74%)
Frame = +1
Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
IALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTR
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTR 134
Query: 436 EHALLAFTLGVKQLIVGVNKMDSTDHHTVSPDLRKSRREYPHTSRRLATTQLLSLSCPFS 615
EHALLA+TLGVKQLIV VNKMD+T + +E + +++ P S
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFVPVS 192
Query: 616 GWHGDNM 636
G+ GDNM
Sbjct: 193 GFQGDNM 199
Score = 141 bits (341), Expect = 9e-35
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 216 DKLKAERE 239
DKLKAERE
Sbjct: 61 DKLKAERE 68
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 96.7 bits (230), Expect = 2e-21
Identities = 42/77 (54%), Positives = 56/77 (72%)
Frame = +1
Query: 271 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 450
FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+L
Sbjct: 311 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 370
Query: 451 AFTLGVKQLIVGVNKMD 501
A T G+ L+V +NKMD
Sbjct: 371 ARTQGINHLVVVINKMD 387
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = +3
Query: 48 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 227
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 228 AERE 239
ERE
Sbjct: 296 EERE 299
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 90.6 bits (215), Expect = 2e-19
Identities = 43/82 (52%), Positives = 53/82 (64%)
Frame = +1
Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTR
Sbjct: 245 VASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTR 304
Query: 436 EHALLAFTLGVKQLIVGVNKMD 501
EHA L LG+ +++V VNK+D
Sbjct: 305 EHAYLLRALGISEIVVSVNKLD 326
Score = 72.5 bits (170), Expect = 5e-14
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +3
Query: 48 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 227
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 228 AER 236
ER
Sbjct: 235 EER 237
Score = 33.9 bits (74), Expect = 0.020
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 516 YSEPRFEEIKKGVSSY-IKKIGYNPAAVAFVPI 611
+SE RF+EIK VS + IK +G+ + V FVPI
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPI 362
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 73.7 bits (173), Expect = 2e-14
Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Frame = +1
Query: 268 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 447
++ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 448 LAFTLGVKQLIVGVNKMDSTDH---HTVSPDLRKSRREY 555
LA +GVKQ++V +NK+D + V ++R+ EY
Sbjct: 163 LARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 42 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 128
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +1
Query: 289 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 468
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 469 KQLIVGVNKMD 501
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 30 PKMGKEKTHINIVVIGHVDSGKST 101
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 286 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 381
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 286 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 381
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.015
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +1
Query: 271 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 441
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 29.1 bits (62), Expect = 0.57
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGI 137
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.026
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 271 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 396
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 262 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 396
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 286 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 396
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.43
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 298 IIDAPGHRDFIKNMITGTSQADCAVLIV 381
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.1 bits (62), Expect = 0.57
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 471
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 472 QLIVGVNKMD 501
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
Score = 28.7 bits (61), Expect = 0.75
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCG 131
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 534 EEIKKGVSSYIKKIGYNPAAVAFVPIFW 617
EE++K V Y KK G + + VP FW
Sbjct: 162 EELEKRVEEYKKKFGEDESVPVPVPDFW 189
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 301 IDAPGHRDFIKNMITGTSQADCAVLIV 381
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 285 LASFELPESNTIVIPTHAQPLVCPIPKHI*RILYPFPGPPSRTSR 151
L F L + +VIP PLV I H R+ P GP + +R
Sbjct: 62 LVKFALDKDVNLVIPGPELPLVEGIEGHFRRVGIPCFGPSALAAR 106
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 517 TVSPDLRKSRREYPHTSRRLATTQLLSLSC 606
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 135 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERESVSQSYCSLE 269
ID +T+ Q+ K + W+ +K++ ES++ C LE
Sbjct: 654 IDDKTVIMCLWNDQQYEKLFYNCEWIFEKIQFHMESITLEDCLLE 698
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 222 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 94
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 523 SPDLRKSRREYPHTSRRLATTQLLSLSCPFSGWHGDNM 636
S + KS++ + + T QLL L+C + +H DNM
Sbjct: 1601 SQSVFKSKKHHLKSIVVKCTLQLLMLNCLWELFHSDNM 1638
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 345 CDHVLDEISVSRSINDGNIVLASFELPES--NTIVI 244
CDH+L IS SR G + FEL + NT+++
Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFELAVTIFNTVML 58
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 297 GNIVLASFELPESNTIVIPTHAQP 226
GNI L S + PE +V P +A+P
Sbjct: 67 GNISLLSVKHPEFQAVVTPGYARP 90
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 9.2
Identities = 25/77 (32%), Positives = 33/77 (42%)
Frame = +1
Query: 379 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTDHHTVSPDLRKSRREYP 558
VA GT E GI NG E+A+ A +I V++ H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 559 HTSRRLATTQLLSLSCP 609
L T S + P
Sbjct: 96 AEVFELTNTLAASPAPP 112
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 177 PGPPSRTSRWYVCQYHHIC 121
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 9.2
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 375 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNTIVI 244
+ +AISL +C LDE + S + + I L S L S+TIV+
Sbjct: 519 QRTAISLAANCCKFLDESNASAA--EEIIPLLSNILQSSDTIVV 560
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 556 PHTSRRLATTQLLSLSCPFSG--WHGDNM 636
PH RL ++L LS PF G W NM
Sbjct: 675 PHDKLRLYALKVLKLSVPFLGLKWKQANM 703
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 9.2
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = +1
Query: 361 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTDHHTVSPDLRK 540
D L V+ G +NGQ EH+L LGV +I + DS + + + K
Sbjct: 581 DGGTLYVSTNNGYVLMFNFQNGQVIEHSLRRNQLGVAPII--LKHFDSKEKNAIFALGEK 638
Query: 541 SRREYPHTSRRLAT----TQLLSLSCPFSGWHGDNM 636
+ Y + + + T T++L++S + G NM
Sbjct: 639 PQLMYYESDKLVITPLSCTEMLNISSYVNPSLGVNM 674
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,340
Number of Sequences: 5004
Number of extensions: 55667
Number of successful extensions: 229
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -