Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0557
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 110 8e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 100 9e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 74 9e-14
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.085
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 33 0.15
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.34
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 32 0.45
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047) 31 1.0
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 1.8
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 29 2.4
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5) 28 5.6
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 27 9.7
SB_14242| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 27 9.7
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013) 27 9.7
SB_3739| Best HMM Match : Pkinase (HMM E-Value=0) 27 9.7
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 110 bits (265), Expect = 8e-25
Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Frame = +1
Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQTR
Sbjct: 3 VGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTR 62
Query: 436 EHALLAFTLGVKQLIVGVNKMDST--DHHTVSPDLRKSRRE 552
EHA+L +LGV QLIV +NK+D +H P R+E
Sbjct: 63 EHAILVRSLGVTQLIVAINKLDMVVLGYHRGKPRSMIGRQE 103
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 100 bits (240), Expect = 9e-22
Identities = 43/77 (55%), Positives = 58/77 (75%)
Frame = +1
Query: 271 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 450
F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276
Query: 451 AFTLGVKQLIVGVNKMD 501
A T GVK L++ VNKMD
Sbjct: 277 AKTAGVKHLVILVNKMD 293
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +3
Query: 120 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
Score = 32.7 bits (71), Expect = 0.26
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +3
Query: 516 YSEPRFEEIKKGVSSYIKKIGYNP 587
++E R+EEIK ++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 182
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 74.1 bits (174), Expect = 9e-14
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +1
Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 357
IALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 27 IALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 180 MGKGSFKYAWVLDKLKAERE 239
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.085
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +1
Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 471
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 472 QLIVGVNKMD 501
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 301 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 480
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 481 VGVNKMD 501
+ NK+D
Sbjct: 123 ILQNKID 129
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 286 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 396
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 31.9 bits (69), Expect = 0.45
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +1
Query: 229 LSVSRYHNRIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG-EFE 405
L+ R ++ +F+ + IID PGH F G+S D A+L+V G E +
Sbjct: 659 LNAIRIQTKMVKEEFDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILVVDIMHGLEPQ 718
Query: 406 AGISKNGQTREHALLAFTLG-VKQLIVGVNKMDSTDHHTVSPDLRKSRREY 555
S N + L V +L DS+ +T+ R +++E+
Sbjct: 719 TIESINLLKKRKTPFVVALNKVDRLFEWKRGPDSSISNTIKKQKRNTKQEF 769
>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
Length = 405
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 294 NIVLASFELP-ESNTIVIPTHAQPLVCPIP 208
N VL F+LP +SNT+V+P +Q + P P
Sbjct: 173 NDVLTEFDLPPQSNTVVVPPTSQRPILPAP 202
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +1
Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 396
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 51 THINIVVIGHVDSGKSTTTGHLIY 122
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/82 (25%), Positives = 32/82 (39%)
Frame = +1
Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
I + + + +D PGH F G D +++VAA QT+
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTK 180
Query: 436 EHALLAFTLGVKQLIVGVNKMD 501
E A GV +I +NK+D
Sbjct: 181 EAISHAQAAGV-PIIFAINKID 201
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 158
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5)
Length = 565
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -1
Query: 584 VVANLLDV*GYSLLDFLKSGLTVWWSVESI 495
V+ + + G+ L +F+K G+ VW++V++I
Sbjct: 215 VLTRMRETGGFCLPEFVKRGVNVWFAVDNI 244
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +1
Query: 343 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTDHHTV 522
TGT+ D + + G+F++ ++ N + LLA +G+ + G+ + HT
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848
Query: 523 SPDLRKSRREYPH 561
+ S E PH
Sbjct: 849 ASTGIMSTAE-PH 860
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
+T++D PGH IK +I G A +I GT E G ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143
>SB_14242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 193 PSNMLGYWTN*RLSVSRYHNRIALWKF-ETSKYYVTIIDAPG 315
P++ GY + R HN I +WK ET KY + A G
Sbjct: 138 PTSTDGYKATHLNGLVRLHNGIQIWKTPETGKYVIEAFGASG 179
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +1
Query: 415 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTDHHTVSPDLRKSRREYPHTSR 570
+K T+ H + +T + K +T HT+ P K PHT++
Sbjct: 19 TKTHTTKPHNIKLYTTKPRTTKPHTTKPHTTKPHTIKPHTTKPHTTKPHTTK 70
>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
Length = 663
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 153 EKFEKEAQEMGKGSFKYAWVLDKLKAERESVSQSYCSL 266
+++ K +EM + K W +KLKAE E+ ++ L
Sbjct: 42 KEYSKLKEEMNSDAVKVKWAQNKLKAELEAHKETKTKL 79
>SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 490
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 447 ARFHPRCQTAHRRSKQNGFH*PPYSEPRFEEIKK 548
A F PR + +R ++N H PYS+ EE +K
Sbjct: 118 ADFAPRARQPNREHRENERHNRPYSQGYHEEERK 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,343,557
Number of Sequences: 59808
Number of extensions: 423556
Number of successful extensions: 1167
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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