Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0557
(638 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 172 2e-43
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 172 2e-43
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 150 7e-37
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 2e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 139 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 113 1e-25
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 113 1e-25
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 103 1e-22
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 69 4e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 69 4e-12
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 69 4e-12
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 69 4e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 69 4e-12
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 44 9e-05
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 40 0.002
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 35 0.056
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.075
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 34 0.099
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.13
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.23
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.23
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.70
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.70
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 31 0.92
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 1.2
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 1.2
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.1
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr... 27 8.6
AL023828-24|CAD56604.1| 196|Caenorhabditis elegans Hypothetical... 27 8.6
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein. 27 8.6
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein. 27 8.6
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 8.6
AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical ... 27 8.6
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 172 bits (418), Expect = 2e-43
Identities = 85/127 (66%), Positives = 95/127 (74%)
Frame = +1
Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
IALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTR
Sbjct: 75 IALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTR 134
Query: 436 EHALLAFTLGVKQLIVGVNKMDSTDHHTVSPDLRKSRREYPHTSRRLATTQLLSLSCPFS 615
EHALLA TLGVKQLIV NKMDST+ + E +++ P S
Sbjct: 135 EHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPIS 194
Query: 616 GWHGDNM 636
G++GDNM
Sbjct: 195 GFNGDNM 201
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 216 DKLKAERE 239
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 172 bits (418), Expect = 2e-43
Identities = 85/127 (66%), Positives = 95/127 (74%)
Frame = +1
Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
IALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTR
Sbjct: 75 IALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTR 134
Query: 436 EHALLAFTLGVKQLIVGVNKMDSTDHHTVSPDLRKSRREYPHTSRRLATTQLLSLSCPFS 615
EHALLA TLGVKQLIV NKMDST+ + E +++ P S
Sbjct: 135 EHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPIS 194
Query: 616 GWHGDNM 636
G++GDNM
Sbjct: 195 GFNGDNM 201
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 216 DKLKAERE 239
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 150 bits (364), Expect = 7e-37
Identities = 69/75 (92%), Positives = 73/75 (97%)
Frame = +1
Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
IALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTR
Sbjct: 75 IALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTR 134
Query: 436 EHALLAFTLGVKQLI 480
EHALLA TLGVKQL+
Sbjct: 135 EHALLAQTLGVKQLV 149
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 216 DKLKAERE 239
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 216 DKLKAERE 239
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 92.3 bits (219), Expect(2) = 1e-21
Identities = 40/43 (93%), Positives = 43/43 (100%)
Frame = +1
Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 384
IALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 75 IALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +3
Query: 510 PPYSEPRFEEIKKGVSSYIKKIGYNPAAVAFVPI 611
PP+SE RF EI VS +IKKIGYNP AV FVPI
Sbjct: 126 PPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPI 159
Score = 28.3 bits (60), Expect(2) = 1e-21
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 475 LIVGVNKMDSTDHHTVSPDLRKSRREYPHTSRRLATTQLLSLSCPFSGWHGDNM 636
L+V NKMDST+ + E +++ P SG++GDNM
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNM 167
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 139 bits (336), Expect = 2e-33
Identities = 63/69 (91%), Positives = 65/69 (94%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 216 DKLKAERES 242
DKLK + +
Sbjct: 61 DKLKVTKSA 69
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 113 bits (272), Expect = 1e-25
Identities = 52/80 (65%), Positives = 62/80 (77%)
Frame = +1
Query: 271 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 450
FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 243 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 302
Query: 451 AFTLGVKQLIVGVNKMDSTD 510
+LGV QLIV VNK+D+ D
Sbjct: 303 LRSLGVTQLIVAVNKLDTVD 322
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 45 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 224
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 225 KAERE 239
+ ERE
Sbjct: 227 EEERE 231
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 113 bits (272), Expect = 1e-25
Identities = 52/80 (65%), Positives = 62/80 (77%)
Frame = +1
Query: 271 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 450
FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 261 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 320
Query: 451 AFTLGVKQLIVGVNKMDSTD 510
+LGV QLIV VNK+D+ D
Sbjct: 321 LRSLGVTQLIVAVNKLDTVD 340
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 45 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 224
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 225 KAERE 239
+ ERE
Sbjct: 245 EEERE 249
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 103 bits (247), Expect = 1e-22
Identities = 45/77 (58%), Positives = 58/77 (75%)
Frame = +1
Query: 271 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 450
FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L
Sbjct: 182 FETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSML 241
Query: 451 AFTLGVKQLIVGVNKMD 501
T GVK L++ VNKMD
Sbjct: 242 VKTAGVKHLVILVNKMD 258
Score = 79.8 bits (188), Expect = 2e-15
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 5/89 (5%)
Frame = +3
Query: 39 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 218
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 219 KLKAERE-----SVSQSYCSLEVRN*QVL 290
ERE V ++Y E R+ +L
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTIL 192
Score = 30.7 bits (66), Expect = 0.92
Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +3
Query: 516 YSEPRFEEIKKGVSSYIKKIGYNPAA-VAFVP 608
+ E RF+EI+ ++ +++K+G+NP + +VP
Sbjct: 264 WEEERFKEIEGKLTPFLRKLGFNPKTDITYVP 295
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 68.5 bits (160), Expect = 4e-12
Identities = 35/66 (53%), Positives = 43/66 (65%)
Frame = +1
Query: 304 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 483
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 484 GVNKMD 501
+NK D
Sbjct: 167 FINKAD 172
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 48 KTHINIVVIGHVDSGKSTTT 107
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 68.5 bits (160), Expect = 4e-12
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Frame = +1
Query: 268 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 447
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 448 LAFTLGV--KQLIVGVNKMDST-DHHT---VSPDLRKSRREY 555
LA +GV ++V +NK+D D T V D+R+ E+
Sbjct: 159 LARQVGVPLDNIVVFMNKVDEVPDAETRELVEMDIREQLNEF 200
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 42 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 212
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 213 LDKLKAER 236
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 68.5 bits (160), Expect = 4e-12
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Frame = +1
Query: 268 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 447
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 448 LAFTLGV--KQLIVGVNKMDST-DHHT---VSPDLRKSRREY 555
LA +GV ++V +NK+D D T V D+R+ E+
Sbjct: 160 LARQVGVPLDNIVVFMNKVDEVPDAETRELVEMDIREQLNEF 201
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 42 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 212
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 213 LDKLKAER 236
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 68.5 bits (160), Expect = 4e-12
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Frame = +1
Query: 268 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 447
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 448 LAFTLGV--KQLIVGVNKMDST-DHHT---VSPDLRKSRREY 555
LA +GV ++V +NK+D D T V D+R+ E+
Sbjct: 160 LARQVGVPLDNIVVFMNKVDEVPDAETRELVEMDIREQLNEF 201
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 42 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 212
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 213 LDKLKAER 236
L+ A+R
Sbjct: 106 LEYETAKR 113
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 68.5 bits (160), Expect = 4e-12
Identities = 35/66 (53%), Positives = 43/66 (65%)
Frame = +1
Query: 304 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 483
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 484 GVNKMD 501
+NK D
Sbjct: 167 FINKAD 172
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 48 KTHINIVVIGHVDSGKSTTT 107
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/86 (30%), Positives = 45/86 (52%)
Frame = +1
Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 471
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 472 QLIVGVNKMDSTDHHTVSPDLRKSRR 549
++I+ +NK D + +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 57 INIVVIGHVDSGKSTTT 107
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/70 (40%), Positives = 33/70 (47%)
Frame = +1
Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 471
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 472 QLIVGVNKMD 501
QL+V VNK+D
Sbjct: 258 QLVVAVNKID 267
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.7 bits (76), Expect = 0.056
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +1
Query: 286 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 465
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 466 VKQLIVGVNKMD 501
+ Q+I +NK+D
Sbjct: 155 I-QIIPVINKID 165
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 176
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.075
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGI 137
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 33.9 bits (74), Expect = 0.099
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1
Query: 289 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 468
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 469 KQLIVGVNKMD 501
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 494 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 366
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGID 140
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = +1
Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 471
+ IID PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 472 QLIVGVNKMD 501
I VNKMD
Sbjct: 166 PFICFVNKMD 175
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 286 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 396
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 286 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 396
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 12 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 122
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 12 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 122
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 30.7 bits (66), Expect = 0.92
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +1
Query: 298 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 477
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 478 IVGVNKMDSTDHHTVSP 528
++ +NK+D + +P
Sbjct: 605 VIALNKIDRLYEYESNP 621
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 277 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 396
+ Y + IID PGH +F M AD V++V A G
Sbjct: 198 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 277 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 396
+ Y + IID PGH +F M AD V++V A G
Sbjct: 73 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 138 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 138 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 57 INIVVIGHVDSGKSTTT 107
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical
protein ZC373.1 protein.
Length = 704
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 184 VKDPSNMLGYWTN*RLSVSRYHNRIALWKFETSKYYV--TIIDAPGHRDFIK 333
V DP+ + G WT + S H+ + KF + V T++DA G +K
Sbjct: 342 VYDPTKLAGEWTQDPETKSWSHSEVEFNKFNPERPLVLDTVLDAIGKTPLVK 393
>Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical
protein ZC373.1 protein.
Length = 704
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 184 VKDPSNMLGYWTN*RLSVSRYHNRIALWKFETSKYYV--TIIDAPGHRDFIK 333
V DP+ + G WT + S H+ + KF + V T++DA G +K
Sbjct: 342 VYDPTKLAGEWTQDPETKSWSHSEVEFNKFNPERPLVLDTVLDAIGKTPLVK 393
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 292 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 387
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 381
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 381
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 190 DPSNMLGYWTN*RLSVSRYHNRIALWKFETSK---YYVTIIDAPGHR 321
DP+ ++G TN R+ + + W FE+ K + V + PG+R
Sbjct: 338 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 384
>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 190 DPSNMLGYWTN*RLSVSRYHNRIALWKFETSK---YYVTIIDAPGHR 321
DP+ ++G TN R+ + + W FE+ K + V + PG+R
Sbjct: 1051 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 1097
>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 190 DPSNMLGYWTN*RLSVSRYHNRIALWKFETSK---YYVTIIDAPGHR 321
DP+ ++G TN R+ + + W FE+ K + V + PG+R
Sbjct: 338 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 384
>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 190 DPSNMLGYWTN*RLSVSRYHNRIALWKFETSK---YYVTIIDAPGHR 321
DP+ ++G TN R+ + + W FE+ K + V + PG+R
Sbjct: 1051 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 1097
>AL023828-24|CAD56604.1| 196|Caenorhabditis elegans Hypothetical
protein Y17G7B.21 protein.
Length = 196
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/39 (25%), Positives = 26/39 (66%)
Frame = +3
Query: 141 KRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERESVSQSY 257
K +E+F++E +E+ G+ + A + +++ ++ S+ +SY
Sbjct: 114 KARVERFQREREELLAGNSQVAILCEEVTSKARSLRESY 152
>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
Length = 1487
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 190 DPSNMLGYWTN*RLSVSRYHNRIALWKFETSK---YYVTIIDAPGHR 321
DP+ ++G TN R+ + + W FE+ K + V + PG+R
Sbjct: 338 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 384
>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
Length = 2200
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 190 DPSNMLGYWTN*RLSVSRYHNRIALWKFETSK---YYVTIIDAPGHR 321
DP+ ++G TN R+ + + W FE+ K + V + PG+R
Sbjct: 1051 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 1097
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -3
Query: 477 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 319
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 318 VSRSINDGNI 289
S S +D I
Sbjct: 84 FSGSKSDAEI 93
>AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical
protein Y102A11A.9 protein.
Length = 332
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 135 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERESVSQSYCSLEVRN 278
+DK ++ KE E+ K KYA KLK + + V +Y S+ +N
Sbjct: 188 LDKSRVKTASKERNELAK---KYAEQNAKLKLKLKEVKNNYASMLEKN 232
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,040,312
Number of Sequences: 27780
Number of extensions: 315514
Number of successful extensions: 1045
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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