Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0556
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)                  30   1.5  
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_12775| Best HMM Match : DUF1237 (HMM E-Value=6.1)                   29   3.5  
SB_19928| Best HMM Match : Neur_chan_memb (HMM E-Value=4e-08)          28   8.1  

>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
          Length = 318

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -1

Query: 192 SGLALPLALLTSMSDGDHLPSGGP 121
           SG+  PLA  TS SD  H P GGP
Sbjct: 33  SGIFSPLASSTSASDSRHRPVGGP 56


>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1408

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 490 VS*KNLLSIFTITSLVHSHSXNMSTS*YFSVSLRSA 383
           V+ KN+L +F+  S VHS++   S+S Y S+ L  A
Sbjct: 216 VAPKNILDLFSDISNVHSYNIRSSSSVYSSIQLADA 251


>SB_12775| Best HMM Match : DUF1237 (HMM E-Value=6.1)
          Length = 328

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 522 KVCHSLANISWYHKKTYYPF---LQSPV*CTHTAXI 424
           KV   + N+ + HK+TY P+   L  P+ CT+T  +
Sbjct: 145 KVATEVLNLIYVHKRTYEPYYALLLLPIICTYTKDV 180


>SB_19928| Best HMM Match : Neur_chan_memb (HMM E-Value=4e-08)
          Length = 173

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 43  LMCFLTIFSEIL-WLFFFYCLFRQ 111
           +MCFL +FS IL + F  Y +FRQ
Sbjct: 34  IMCFLFVFSAILEYSFVSYLVFRQ 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,292
Number of Sequences: 59808
Number of extensions: 334978
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)